PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G069700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 359aa    MW: 39327.8 Da    PI: 7.2507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G069700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.77.9e-52331611129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF P+dee+v++yLk+kve++++++  +i evd+ ++eP +Lp k+k++ekewyfF ++d+ky+tg r nrat+ gyWkatgkdke
  Sevir.5G069700.1.p  33 LPPGFRFYPSDEEIVTFYLKPKVEQRSFTC-IAIGEVDLKRTEPCELPGKAKTGEKEWYFFYEKDRKYRTGLRMNRATEGGYWKATGKDKE 122
                         79**************************99.88***************99999************************************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++++ +g l+g+kktLvfy+grap+g+kt+Wvmheyrle
  Sevir.5G069700.1.p 123 IYRAmTGVLIGMKKTLVFYTGRAPRGQKTTWVMHEYRLE 161
                         **9988999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5930198IPR003441NAC domain
PROSITE profilePS5100556.7433198IPR003441NAC domain
PfamPF023651.5E-2734160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MADQGVLFAH DQGTTGDQHQ QPHGIGVGDD LELPPGFRFY PSDEEIVTFY LKPKVEQRSF  60
TCIAIGEVDL KRTEPCELPG KAKTGEKEWY FFYEKDRKYR TGLRMNRATE GGYWKATGKD  120
KEIYRAMTGV LIGMKKTLVF YTGRAPRGQK TTWVMHEYRL EGNNKSPHPS SSSTSTTMKS  180
SSASEATDEW VVCRVFRKAT GIKKAPTPPP YNHAIVDSGI DQRSIPMPPP LQLPMLPNFT  240
MDPVGSYYSI AGVSSSSLSP VIPPITAGTG NDMLQMNSAL FGNMMAVPPP MPFSHQLGIG  300
TASASTFMAA PQSEASSILS QKDVGMSLHQ TNAMDISSMV SATLESMGTM DMDGFWKY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-483120415171NO APICAL MERISTEM PROTEIN
1ut4_B5e-483120415171NO APICAL MERISTEM PROTEIN
1ut7_A5e-483120415171NO APICAL MERISTEM PROTEIN
1ut7_B5e-483120415171NO APICAL MERISTEM PROTEIN
3swm_A5e-483120418174NAC domain-containing protein 19
3swm_B5e-483120418174NAC domain-containing protein 19
3swm_C5e-483120418174NAC domain-containing protein 19
3swm_D5e-483120418174NAC domain-containing protein 19
3swp_A5e-483120418174NAC domain-containing protein 19
3swp_B5e-483120418174NAC domain-containing protein 19
3swp_C5e-483120418174NAC domain-containing protein 19
3swp_D5e-483120418174NAC domain-containing protein 19
4dul_A5e-483120415171NAC domain-containing protein 19
4dul_B5e-483120415171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G069700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682347.10.0NAC domain-containing protein 48
SwissprotQ9FLJ25e-69NC100_ARATH; NAC domain-containing protein 100
TrEMBLK3XJD00.0K3XJD0_SETIT; Uncharacterized protein
STRINGSi002003m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-70NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]