PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G068500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 420aa    MW: 44478 Da    PI: 7.3229
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G068500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.37.7e-053103481255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Sevir.5G068500.1.p 310 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 348
                         7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.163298347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-5308352No hitNo description
SuperFamilySSF474595.89E-11308359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-8312355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MMASSSSSSN LSDHLVQDDL PWPSSSSLPF APTPHSAVIG GSHQWSQQPP MLNCGDHHHS  60
DELEVLLSAQ GHNHSHHAAS PLAPHQLSSL LMMQDLGFQW SNCSFADAVS VPTNGQQDGH  120
SKIKEEQPFN PRSSSCAGAA MAYHDIVLDG GGGGGGLPAM AAAGLDGAVL PSVNISRPPQ  180
QLMKAWPAAP PPLPGDAFEI LASSRLCKTL LLSPSVLLHN GMPLLRSEHV PHGPPPAHPQ  240
GPSGDNYRQQ MVGAALVNEA AGGNRHWSAE HDAACQKAAR PVPSSQAPSS LKKPRVESRA  300
STIVPSFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA IGYIKFLQDQ VETLSGPYLK  360
SSRNKKPRTT QRGPSDANGG EEETRLDLRS RGLCLVPLSC TSYVTNENGA WAPPNFRGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G068500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1194937e-54AK119493.1 Oryza sativa Japonica Group cDNA clone:001-134-D09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967934.10.0transcription factor bHLH110 isoform X1
TrEMBLA0A368R2230.0A0A368R223_SETIT; Uncharacterized protein
STRINGSi001592m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.12e-47bHLH family protein