PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G068000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 358aa    MW: 38812.7 Da    PI: 7.1273
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G068000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.76.6e-51291661128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yL+k++++ ++++  vi+evdiyk++PwdLp+k+  +e ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+
  Sevir.5G068000.1.p  29 LPPGFRFHPTDEELILHYLRKRAAAAPCPA-PVIAEVDIYKFDPWDLPAKAIFGEAEWYFFSPRDRKYPNGVRPNRAAGSGYWKATGTDKP 118
                         79***************************9.89***************77777999*********************************** PP

                 NAM  92 vlsk........kgel.....vglkktLvfykgrapkgektdWvmheyrl 128
                         ++ +        +        +g+kk Lvfykgr pkg kt+W+mheyrl
  Sevir.5G068000.1.p 119 ITLSdggaaaadS--SesramIGVKKALVFYKGRPPKGMKTSWIMHEYRL 166
                         ***9666555550..055666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-6225199IPR003441NAC domain
PROSITE profilePS5100559.24329199IPR003441NAC domain
PfamPF023651.2E-2630166IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTIDLGLAPA SASASSGGRG GMPSPCTALP PGFRFHPTDE ELILHYLRKR AAAAPCPAPV  60
IAEVDIYKFD PWDLPAKAIF GEAEWYFFSP RDRKYPNGVR PNRAAGSGYW KATGTDKPIT  120
LSDGGAAAAD SSESRAMIGV KKALVFYKGR PPKGMKTSWI MHEYRLAEAL AAAATYRPMR  180
FKNSSMRLDD WVLCRIYKKT TPQLYSSPLQ DEPSSMDGGL DLGRQHDDSV SVDDIAATYA  240
PAGRLPRPAS ISDYLVDYTA VSELFESMPA PETTALLGTD AGSRLYVTNN GQAASSSSAQ  300
QQSSHKRRFM EDYSNGDLDM LHASSNKRVM SDQASMAAIN NTFSLFEPGQ TSLPDRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-702320111167NO APICAL MERISTEM PROTEIN
1ut4_B5e-702320111167NO APICAL MERISTEM PROTEIN
1ut7_A5e-702320111167NO APICAL MERISTEM PROTEIN
1ut7_B5e-702320111167NO APICAL MERISTEM PROTEIN
3swm_A6e-702320114170NAC domain-containing protein 19
3swm_B6e-702320114170NAC domain-containing protein 19
3swm_C6e-702320114170NAC domain-containing protein 19
3swm_D6e-702320114170NAC domain-containing protein 19
3swp_A6e-702320114170NAC domain-containing protein 19
3swp_B6e-702320114170NAC domain-containing protein 19
3swp_C6e-702320114170NAC domain-containing protein 19
3swp_D6e-702320114170NAC domain-containing protein 19
4dul_A5e-702320111167NAC domain-containing protein 19
4dul_B5e-702320111167NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G068000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554201e-166EU955420.1 Zea mays clone 1531701 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967928.10.0NAC domain-containing protein 18
TrEMBLA0A368R2210.0A0A368R221_SETIT; Uncharacterized protein
STRINGPavir.Ea00837.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-74NAC domain containing protein 25