PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G060300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | C3H | ||||||||
Protein Properties | Length: 165aa MW: 17882 Da PI: 8.4807 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.3e-09 | 66 | 87 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++f rtGtCkyGd+C++ H++ Sevir.5G060300.1.p 66 CHHFVRTGTCKYGDSCRYFHPK 87 ********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 1.7E-5 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 5.2E-16 | 4 | 48 | No hit | No description |
Pfam | PF06220 | 7.4E-11 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.896 | 60 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-4 | 62 | 87 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 64 | 89 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-7 | 65 | 87 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.8E-6 | 65 | 86 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MPLGKYYCDY CDKQFQDTPA ARKRHLQGVQ HQRARALWYD TVRHQDQHGG ASSLLLPDGT 60 LAKGVCHHFV RTGTCKYGDS CRYFHPKPDG ANPSLAAPGP GPGAMVHQSN FLASQPNLVG 120 YQAAERNSFS GNVLGAHSSW GNLPPSLQPP PEGSYPPLPF VDWG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G060300.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU944535 | 1e-144 | EU944535.1 Zea mays clone 221714 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967856.1 | 1e-118 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 1e-76 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | K3XMN3 | 1e-117 | K3XMN3_SETIT; Uncharacterized protein | ||||
STRING | Si003156m | 1e-117 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12617 | 23 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 3e-40 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G060300.1.p |
Publications ? help Back to Top | |||
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