PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G055800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 451aa    MW: 48231.4 Da    PI: 8.2248
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G055800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.23.7e-104268127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C ++ rtG C yG+rC+++H++
  Sevir.5G055800.1.p 42 PGEVDCAYYIRTGSCGYGERCRYNHPR 68
                        57899********************96 PP
2zf-CCCH40.44.9e-1392118127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC ++a++GtCk+G++CkF+H++
  Sevir.5G055800.1.p  92 PGQPLCEYYAKNGTCKFGSNCKFNHPR 118
                         589**********************96 PP
3zf-CCCH38.81.6e-12137162227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G++CkF+H++
  Sevir.5G055800.1.p 137 GEKECSYYMKTGHCKFGATCKFHHPE 162
                         6789********************96 PP
4zf-CCCH39.97.1e-13290316127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C ++++tGtCkyG+ Ck++H++
  Sevir.5G055800.1.p 290 PGQPECEHYMKTGTCKYGAACKYHHPQ 316
                         5789*********************97 PP
5zf-CCCH27.65.1e-09338362327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +C+++a  G+Ck+G++CkF H++
  Sevir.5G055800.1.p 338 SQPCSYYAHHGFCKFGPTCKFDHPM 362
                         679********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.7794169IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-54168IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-74368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-64670IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-54768IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-791118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.93491119IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-1093118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-694119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-696119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577135163IPR000571Zinc finger, CCCH-type
SMARTSM003566.9E-6135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6137162IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10137162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859289317IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6289316IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10291316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5293316IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4295314IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.802335363IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5335362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-6337366IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-6337362IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4339360IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEPYGAAKGG GGDAGTGLEE SMRRLGLGGG DGDGDAKLPE RPGEVDCAYY IRTGSCGYGE  60
RCRYNHPRDR DRAAPVNGVG RTAGTVEYPE RPGQPLCEYY AKNGTCKFGS NCKFNHPREG  120
GFVPVALNSS GFPIRQGEKE CSYYMKTGHC KFGATCKFHH PELGFLSEAP TMYPPVQPSP  180
LSSPHPYPHL ANWQMGRPPV VPGSFLPGSY PPMMLPPTLM PMQGWNPYIS PMNQVAPAGG  240
QQTVQAGPPY GMSHQGPSSA VTYGSHYAQL YSSTGTSSSN IQEYTLPERP GQPECEHYMK  300
TGTCKYGAAC KYHHPQYFSG PKSNCVLSPL GLPLRPGSQP CSYYAHHGFC KFGPTCKFDH  360
PMGTLNYSPS VSSLTDVPVA PYPPSLPLTP MAPYPSPSDL RPQYTLTKDS SANPPAVPGT  420
TYGPVGTISK VYAPHTLIRS PTSAAAGMQA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G055800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967812.10.0zinc finger CCCH domain-containing protein 5
SwissprotQ5NAV30.0C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBLK3XHQ00.0K3XHQ0_SETIT; Uncharacterized protein
STRINGSi001422m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.32e-99C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]