PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G055700.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 473aa    MW: 49692.4 Da    PI: 7.2578
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G055700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-106086127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C +++rtG C +G+rC+++H++
  Sevir.5G055700.2.p 60 PGEADCGYYLRTGACGFGERCRYNHPR 86
                        57899********************96 PP
2zf-CCCH37.34.7e-12110135227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         +++ C +f++tGtCk+G++Ck++H++
  Sevir.5G055700.2.p 110 GQPVCEYFLKTGTCKFGSNCKYHHPK 135
                         7899********************96 PP
3zf-CCCH39.87.3e-13155180227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++C+++++tG+Ck+G++CkF+H++
  Sevir.5G055700.2.p 155 GEKECSYYMKTGQCKFGSTCKFHHPE 180
                         7899********************96 PP
4zf-CCCH39.21.2e-12308334127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C++++rtG Ck+G++Ck++H++
  Sevir.5G055700.2.p 308 PGQPECQYYMRTGDCKFGATCKYNHPR 334
                         5789*********************96 PP
5zf-CCCH322.1e-10357380427
                         ---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          +C ++a++G+C+yG  Ck+ H++
  Sevir.5G055700.2.p 357 QPCAYYAQNGYCRYGVACKYDHPM 380
                         69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6765987IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-55986IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-86186IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-56387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0016586IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577108136IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-10110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-7111137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-6113137IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6153180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.812153181IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10155180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-6156180IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4159179IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6307334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263307335IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-10309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5311335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4313334IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5354382IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8357380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-5357378IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MEPPHAEEAA AAGGGGGGGE GGRASPGTGL EGPMLRLGLD GGGEGEDGER EADARLPERP  60
GEADCGYYLR TGACGFGERC RYNHPRDRGG TEFGGGTKNG AAPDFPERQG QPVCEYFLKT  120
GTCKFGSNCK YHHPKQDGSV QSVILNNNGF PLRPGEKECS YYMKTGQCKF GSTCKFHHPE  180
FGGIPVTPGI YPPLQSASVP SPHTYAPLAN WQMGRSPVVP GSYMPGSYTP MMLSSGMVPL  240
QGWSPYPASV NPVASGGAQQ TVQAGPLYGI GHHGSSATIA YGSPYMPYSS STGQSSNNHQ  300
EHGFPERPGQ PECQYYMRTG DCKFGATCKY NHPRDWSAAK SNYMFSPLCL PLRPGAQPCA  360
YYAQNGYCRY GVACKYDHPM GTLGYSSSAL PLSDMPIAPY PLSFSVATLA PSPSSPEYIS  420
TKDPSMNQVA SPVAAPEPVG AVLPKGGFPP DTIMRTQTST TGVGSSSPGG GR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G055700.2.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967811.10.0zinc finger CCCH domain-containing protein 6
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLK3XHD20.0K3XHD2_SETIT; Uncharacterized protein
STRINGSi001303m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]