PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G054100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 517aa MW: 56449.9 Da PI: 6.0796 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.5 | 1.4e-49 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGf F P+d elv +yLk+k++g+k+e + i+evdiyk+ePwdLp+ ++ e+++w+fF++rd+ky+tg+r+nrat +gyWk+tgkd Sevir.5G054100.1.p 9 LPPGFGFYPSDTELVGHYLKRKIHGQKIEH-DLIPEVDIYKHEPWDLPAkcNFPIEDNKWHFFASRDRKYPTGSRSNRATVAGYWKSTGKD 98 79**************************99.99***************6245555999********************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ ++++ g+kktLvf++gr p+g++t+W+mhey + Sevir.5G054100.1.p 99 RAIKL-NKKTLGTKKTLVFHEGRPPSGRRTEWIMHEYYI 136 *****.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-57 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.903 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.9E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 517 aa Download sequence Send to blast |
MEALRNMKLP PGFGFYPSDT ELVGHYLKRK IHGQKIEHDL IPEVDIYKHE PWDLPAKCNF 60 PIEDNKWHFF ASRDRKYPTG SRSNRATVAG YWKSTGKDRA IKLNKKTLGT KKTLVFHEGR 120 PPSGRRTEWI MHEYYIDEKE CQVSPDMKDA FVLCRVTKRN DWALDNDNEV GNINPHPHPQ 180 QPNGAATLVV SAVKPEDTAD SVICAEEPNH VATPVGSAQL SNDVAIAGIT ADTASPNSSN 240 ELEAWLEELL DHSPSFNPIP DTGSALPSLT EQHAESSNPG SVVPKIGPDH ASPMNDGTDA 300 TDYLFPEDLP EDLYSMLYPG NDDFSNSILV EPAGHAATNQ TYCLMGGSPF ALPNNSEEGI 360 PKDGLQLDQE NNNPNLSNGN SDTGIIIRGH RATASSANIS PAFGRIKMQV GINKMVSSNS 420 ESINQTMKFA DNSGRRLDLT TSVECQKKHA NDATSVKQSD TTKPIEGHGN QGYLRGIRNG 480 FRCSSAGFNV HILFAIFLIG VAAAVALHYH RSGASL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-44 | 7 | 162 | 13 | 172 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G054100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967788.1 | 0.0 | NAC domain-containing protein 74 | ||||
Swissprot | Q7GCL7 | 1e-172 | NAC74_ORYSJ; NAC domain-containing protein 74 | ||||
TrEMBL | K3XGK1 | 0.0 | K3XGK1_SETIT; Uncharacterized protein | ||||
STRING | Si001021m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7560 | 38 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G17730.1 | 4e-59 | NAC domain containing protein 57 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G054100.1.p |
Publications ? help Back to Top | |||
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