PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G052000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 573aa    MW: 62303.3 Da    PI: 4.7853
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G052000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.8e-39194252260
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                         ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+k+
  Sevir.5G052000.1.p 194 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSKN 252
                         7899****************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31183251IPR003851Zinc finger, Dof-type
PfamPF027014.4E-32196252IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.891198252IPR003851Zinc finger, Dof-type
PROSITE patternPS013610200236IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MSDQKDPGIK LFGRVIPLAP EPAPEATETE DPLGHDQPPE ELQPRAPEEE AAAVADEGQH  60
NEKEDTEDSE MEVDTPQEKG SEMKVDTPLE KGNEMKIDTP QEEKGNEMKF DASKKEQDGE  120
MKVDAQQEKK DEQMKVDAPP RAENIQPGTS PRSDHKKEDQ GQMNSTEDKA ASDPKGESEK  180
ANDESGQDKT LKKPDKILPC PRCNSMDTKF CYYNNYNVNQ PRHFCKNCQR YWTAGGTMRN  240
VPVGAGRRKS KNAPLHYRQL LMAPDCMLGS RVDISKSVLP EALVSPPSAP VQPTSRNETV  300
LKFGPEVPLC ESLVSALNID EQNAKNPGSA PRGENREDNS CASAVTSYNG LPENTVHVDK  360
NGAPVYCNGV APVPQYYLGT PFMYPWSVGW NNLPVMVPGK SMPEAASASE SCSTSSAPWM  420
TSPMMPASTS PAFPYPLVPP ALWGCLSGWP ATTWNIPWVR TNGCVSPSSS SNSSCSGNGS  480
PTLGKHSRDS NPLKDEKQEK SLWVPKTLRI DDPDEAAKSS IWATLGIKPG DPGTFKPFQS  540
KVESKGQKAD AAQVLQANPA ALSRSQSFQE SS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G052000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2995600.0KF299560.1 Miscanthus sacchariflorus clone Msac_GC_7 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967771.10.0cyclic dof factor 2
TrEMBLA0A368R1G20.0A0A368R1G2_SETIT; Uncharacterized protein
STRINGSi000689m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP143438116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.28e-68cycling DOF factor 2