PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G039100.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Dof

Protein Properties

Length: 526aa MW: 55982.8 Da PI: 8.6222

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G039100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	102.2	3.2e-32	215	275	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPry.fCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ l+c+rC+s+ tkfCy+nny+ +qPr+ +Ck C+ryWt GG+lr+vPvG++rrkn+++ Sevir.5G039100.1.p 215 PDTVLPCARCNSMRTKFCYFNNYNANQPRHyYCKDCKRYWTDGGTLRDVPVGSARRKNRSN 275 678899*********************637************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	203	273	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.3E-27	217	274	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	24.204	219	274	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MDASSGLDCD QYEDPEWHAA IQLVGLCVPV AGAPNSDAAA AAPEVSIRSL ISLSASRNHS 60 FVVAGCSWGE RRARKLNRAR LFLLSIALSN AVVWAMVRAD RGFRSPMLPS FSYGNSSAAM 120 CVFLARDHLV GRRRGGEGVG ERRLTVVRWT AAACARTSGA NKAPAPMSWA QSGSQPIWTS 180 EVPEASERAA EQAPVRVSTK NDADGSGKEK EFKKPDTVLP CARCNSMRTK FCYFNNYNAN 240 QPRHYYCKDC KRYWTDGGTL RDVPVGSARR KNRSNANGDV AGTSRRRSRV FKPLAIPGPA 300 AEESGAATTS GSEMVLGKPL CPAHNTEEQK NSTDLVGPGD NKEEKSCLSS AVAPSGSSDN 360 SGSNSAAVTA STQSSTDGTQ ELVNSGVSRL LLMPTTMPGP GIRAPAVTFP QVPFYWSCIP 420 GWPNGASSVP WPGSSGTTLP PVPACSGSLA LGKHPREEEE AEKTFWVPKA LRVTDPEEAA 480 KSTIWASLGI KPDERILQSK DENGKTPESP AACSISCSLT FQNRT*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MDASSGLDCD QYEDPEWHAA IQLVGLCVPV AGAPNSDAAA AAPEVSIRSL ISLSASRNHS  60
FVVAGCSWGE RRARKLNRAR LFLLSIALSN AVVWAMVRAD RGFRSPMLPS FSYGNSSAAM  120
CVFLARDHLV GRRRGGEGVG ERRLTVVRWT AAACARTSGA NKAPAPMSWA QSGSQPIWTS  180
EVPEASERAA EQAPVRVSTK NDADGSGKEK EFKKPDTVLP CARCNSMRTK FCYFNNYNAN  240
QPRHYYCKDC KRYWTDGGTL RDVPVGSARR KNRSNANGDV AGTSRRRSRV FKPLAIPGPA  300
AEESGAATTS GSEMVLGKPL CPAHNTEEQK NSTDLVGPGD NKEEKSCLSS AVAPSGSSDN  360
SGSNSAAVTA STQSSTDGTQ ELVNSGVSRL LLMPTTMPGP GIRAPAVTFP QVPFYWSCIP  420
GWPNGASSVP WPGSSGTTLP PVPACSGSLA LGKHPREEEE AEKTFWVPKA LRVTDPEEAA  480
KSTIWASLGI KPDERILQSK DENGKTPESP AACSISCSLT FQNRT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	75	ERRARKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G039100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987428.1	0.0	cyclic dof factor 2-like, partial
TrEMBL	A0A3L6QYN5	1e-123	A0A3L6QYN5_PANMI; Uncharacterized protein
STRING	Pavir.Eb01147.1.p	3e-96	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-43	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Sevir.5G039100.1.p