PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.5G017100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 436aa    MW: 46667.4 Da    PI: 7.2314
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.5G017100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.74.7e-19121532128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya..tgk...........rkn 75 
                         p G+rF Pt+ el    L  k++g k   + ++++++v i++++P++L +k+++  e++ +yfFs+r  k++                r+ 
  Sevir.5G017100.1.p  12 PCGYRFVPTNLELF-SLLSDKIDGAKlrPPHNSIFHDVPILDYHPEELCEKFRKdaEHRCIYFFSRRVFKKQgtG-GgaitpegkkepRPV 100
                         89***********9.99*******99765555779*************86555511444559**99987776550.245555555666999 PP

                 NAM  76 ratksgyWkatgkdkevlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ra++ g+Wka+g  k ++     +g + g   t+vfy   ++   k++W mhe+++
  Sevir.5G017100.1.p 101 RAARGGTWKASGGGKLLCWPrnkGGFVAGRVVTMVFY---DHGVDKSNWGMHEFTV 153
                         99***********999987644455569999******...344458********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-227183IPR003441NAC domain
PROSITE profilePS5100524.1711185IPR003441NAC domain
PfamPF023654.2E-1212152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MAGGFLTKHG FPCGYRFVPT NLELFSLLSD KIDGAKLRPP HNSIFHDVPI LDYHPEELCE  60
KFRKDAEHRC IYFFSRRVFK KQGTGGGAIT PEGKKEPRPV RAARGGTWKA SGGGKLLCWP  120
RNKGGFVAGR VVTMVFYDHG VDKSNWGMHE FTVPVDKRLR LSSLPTNFSK YIRFEDLALY  180
RIYILRSGDM EIENAAGSSS LQMLANANDH FSALSTAVAP CLPIQPSWGV FAAGASTTSQ  240
TPQQQHPGVD HSHYYHHQPA FGAASAGAAA QQQAHNVSVH GAGLPGYSCQ FASPPAPAPM  300
PPAAANPAAH QAPATAAQAH GTRQEAGHFG ATHSPCPPPA EQHATATTEP AHAQFADCFK  360
PVEEAAPPQL EDIVLTAEDD RMGMADADEY LGAGIPDWDL GFAPFDRRAQ LALHDGGDPG  420
VGGPGVRRTA GDGRR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.5G017100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967494.10.0NAC domain-containing protein 48
TrEMBLK3XHY70.0K3XHY7_SETIT; Uncharacterized protein
STRINGSi001509m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63790.12e-09NAC domain containing protein 102