PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G014500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 38135.2 Da PI: 4.3098 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.6e-20 | 118 | 168 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+++AeIrd + r r++lg+f+taeeAak ++ a+ +l+g Sevir.5G014500.1.p 118 PRFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAIQLRG 168 689*******.**********88.....55*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.8E-12 | 118 | 168 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.94E-29 | 118 | 178 | No hit | No description |
PROSITE profile | PS51032 | 23.301 | 119 | 176 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 119 | 176 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-29 | 119 | 177 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-35 | 119 | 182 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-10 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MWAMEEEMFV AVRRTEHVEV TSRAVEVAPA AAAGPRTVRV FCDDYDATDS SGDEDDEEAA 60 AAARRRVKRY VQEIRLERAV KEAPAAKAAA SSAAAAAAAA RTKLVLPGRK RKADGAEPRF 120 RGVRRRPWGK YAAEIRDPWR RVRVWLGTFD TAEEAAKVYD SAAIQLRGPD ATTNFEQVDD 180 PVPTEVAERL PQPPPPAASK NASSSATSYD SGEESHAAAA SPTSVLRSFP PSAVAEDTCG 240 KKPAPAAQPA YRAPETDESS VDGSVFGCPF TGDDCFGGEF PPLYTDFDLL ADFPEPSLDF 300 LADLPEEPLS LPSMSAGTSA AGESSPEPAS PAGWLQVDDF FQDITDLFQI DPLPVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-19 | 115 | 175 | 9 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G014500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU942421 | 1e-113 | EU942421.1 Zea mays clone 1496106 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967470.1 | 0.0 | ethylene-responsive transcription factor CRF1 | ||||
TrEMBL | A0A368R031 | 0.0 | A0A368R031_SETIT; Uncharacterized protein | ||||
STRING | Si002247m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1690 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53290.1 | 4e-29 | cytokinin response factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G014500.1.p |