PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.5G008800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 935aa MW: 102327 Da PI: 5.0183 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.2e-19 | 50 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l Sevir.5G008800.2.p 50 KGNWTPEEDSILSRAVQTYQGKNWKKIAECFP-DRTDVQCLHRWQKVL 96 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.1 | 1.1e-19 | 102 | 148 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v+++G++ W+tIa+ ++ gR +kqc++rw+++l Sevir.5G008800.2.p 102 KGPWSKEEDEIIVQMVNKYGPKKWSTIAQALP-GRIGKQCRERWHNHL 148 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.3 | 4.8e-15 | 154 | 196 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ Sevir.5G008800.2.p 154 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 196 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.214 | 45 | 96 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.28E-19 | 48 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-17 | 49 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 50 | 96 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.36E-15 | 52 | 96 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 52 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 31.92 | 97 | 152 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.26E-31 | 99 | 195 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-18 | 101 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.72E-16 | 104 | 148 | No hit | No description |
Pfam | PF13921 | 3.0E-18 | 105 | 165 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-27 | 108 | 151 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 152 | 203 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.654 | 153 | 203 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 153 | 201 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.53E-11 | 156 | 196 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 935 aa Download sequence Send to blast |
MASDKAKVAK KGGEDPGLPP ASREGENSHE PQRQRSLNGR TTGPTRRSTK GNWTPEEDSI 60 LSRAVQTYQG KNWKKIAECF PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKY 120 GPKKWSTIAQ ALPGRIGKQC RERWHNHLNP AINKEAWTQE EEITLIHAHR MYGNKWAELT 180 KFLPGRTDNA IKNHWNSSVK KKVDSYISSG LLSQVPCLPL IECPSQCNSL STMNLQNNGD 240 SGCNAQNTNL ALSCDLQENM DANKSEAQDS HSSMCQGTCY TSTEAVGSAL PDGHHHLSSS 300 FSQRLDLQMD VHEGSGNSMF VDEQTLCSTS NQENSMVPFG VAQEMPVSVL SSVSDAEQKL 360 HLISDADSLK SELWKDVSLQ TLISGDTVDA ASSGLNQLPD TSKTDTNFLA QPYPLHTSNP 420 SSVMETVYER STLVTVSSSF LCLDSLPGAP GNRSEPMDML DSEAEMITCS NNSFCDAEQS 480 AKPGSSDDRP GDFTMIENTT NCRSQQSTDA EEAVASTAKE QLPKDIETVP DEKKGEGALF 540 YEPPRFPGVD VPFISCDLVT SADLQEFSPL GIRQWMRSTM NVPTPLRLWG SPTHDESPDA 600 LKTAAESFPC TPSIMKKRHR GLLSPTPDKR IEKKSGIAKE MTDISYMITA TCSVNTTKDE 660 ATVTESLVCA EQSSFKHLDK KLEFSDGNKE NSDGAPEQAR DAQNAGNKQL VDEGGQRCSS 720 PNVANPNADL PDNSQPVGIL VEHEHNCNDL IATDHGAKPE SLSFCKEAVN SKSKPADLVV 780 EKSSPCINAD YEYVNLLADT PGVKRGLESP SAWKSPWYID MHMSFQGFVS PADRTYDALG 840 LVKQISKHSA AAAVEACEVL ASGSRPSDAE NKENTDDKEP GTRKSQTKIM AEARVLDFDE 900 YSTPARTADK RLSSCLGRSV SSPILSSPNL RSFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-67 | 50 | 203 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00466 | DAP | Transfer from AT4G32730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.5G008800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT087506 | 1e-155 | BT087506.1 Zea mays full-length cDNA clone ZM_BFb0098J09 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681998.1 | 0.0 | transcription factor MYB3R-1 isoform X1 | ||||
TrEMBL | A0A368R058 | 0.0 | A0A368R058_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Ea00087.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-105 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.5G008800.2.p |