PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.5G002700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

NAC

Protein Properties

Length: 325aa MW: 35248.5 Da PI: 6.3451

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.5G002700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.6	7.4e-51	19	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrF+Ptd+e++v+yLkkk+++ + + ++i++vdiyk++PwdLp k++ ++ ew+fFs+rd+ky++g r+nr + sgyWkatg+dk Sevir.5G002700.1.p 19 LPPGFRFQPTDQEIIVCYLKKKIDAATAVT-SIIADVDIYKFDPWDLPdKAAMFGDGEWFFFSPRDRKYPNGARPNRRAGSGYWKATGTDK 108 79**********************9777.89***********555556889****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++l+ +g+ g+kk Lvfy+gr+pkg+kt+Wvmheyrl Sevir.5G002700.1.p 109 PILA-SGRCLGVKKALVFYQGRSPKGTKTHWVMHEYRL 145 .999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-62	13	170	IPR003441	NAC domain
PROSITE profile	PS51005	58.9	19	170	IPR003441	NAC domain
Pfam	PF02365	5.6E-26	20	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MGEAEASAGG SLVFRGCQLP PGFRFQPTDQ EIIVCYLKKK IDAATAVTSI IADVDIYKFD 60 PWDLPDKAAM FGDGEWFFFS PRDRKYPNGA RPNRRAGSGY WKATGTDKPI LASGRCLGVK 120 KALVFYQGRS PKGTKTHWVM HEYRLLDAAP PMSSNSMRLD DWVLCRVRNK QQLLVPDHGY 180 SSSSSEPTTR AAADIVSSSS SEVVLPDSSS AAFADIHWNS DDHLLRYLIG GGGSGNPSTA 240 SASAVAAGHH DNYSAPPPHP HALVSVLESI KRNLSFQAID ELYLLQPPSK RANCIAAAGD 300 DDDDHIQQIL SPTSFSISEA DEMF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-68	19	171	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-68	19	171	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-68	19	171	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-68	19	171	17	166	NO APICAL MERISTEM PROTEIN
4dul_A	3e-68	19	171	17	166	NAC domain-containing protein 19
4dul_B	3e-68	19	171	17	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.5G002700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT067914	3e-68	BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds.
GenBank	EU971399	3e-68	EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds.
GenBank	KP297932	3e-68	KP297932.1 Zea mays Zma1158 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004971462.1	0.0	NAC transcription factor 32
TrEMBL	K3XQK9	0.0	K3XQK9_SETIT; NAC domain transcriptional regulator
STRING	Si004195m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13797	19	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	6e-71	NAC family protein

Link Out ? help Back to Top
Phytozome	Sevir.5G002700.1.p