PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G295800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 331aa    MW: 35948.9 Da    PI: 4.7147
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G295800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.41.9e-11165207754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sevir.4G295800.1.p 165 MAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMKEL 207
                         79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.96E-5151212No hitNo description
PROSITE profilePS5088815.269158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16162230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9165207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15165225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.58E-4258286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MELDEQAFLE EILSLRRDAW DCNAMSDFFS PAAACTAAMD CSFQDRHQPP PTVSVLPTFT  60
ASYDQPQPQP QPHPHPAAPG FDCLSEVYGA AAAFGGNNVA DYGAEMGFLD VIEPKAALTE  120
GGLGVCKVEP GLAEGGGAFG AGAAPPAPPA SKKKRVEGMP SKNLMAERRR RKRLNDRLSM  180
LRSVVPKISK MDRTSILGDT IDYMKELLER IKLLQEEIDE QQQETPGVLS VFRELNPNEM  240
VARNTPKFDV ERKEGGETRV EIYCAAKPGL LLSTVSTLEN LGLDIQQCVV SCFNDFGMHA  300
SCSEMQRERI SADAIKQELF KNAGYGGGCL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152172KKRVEGMPSKNLMAERRRRKR
2166173ERRRRKRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G295800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0429110.0BT042911.1 Zea mays full-length cDNA clone ZM_BFc0062P05 mRNA, complete cds.
GenBankEU9635380.0EU963538.1 Zea mays clone 263876 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966488.10.0transcription factor bHLH93 isoform X2
SwissprotQ9LSL12e-68BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A3L6S1270.0A0A3L6S127_PANMI; Transcription factor bHLH93-like isoform X2
STRINGSi006877m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-66beta HLH protein 93
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sharma N, et al.
    NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis.
    Development, 2016. 143(4): p. 682-90
    [PMID:26758694]
  4. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]