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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sevir.4G283300.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family |
C3H |
Protein Properties |
Length: 397aa MW: 43443.9 Da PI: 8.6841 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sevir.4G283300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 33.1 | 9.6e-11 | 5 | 26 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25
+elCr+f+r G CkyG++C+F H
Sevir.4G283300.1.p 5 HELCRNFQR-GSCKYGAQCRFVH 26
79*******.************* PP
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Sequence ? help Back to Top |
Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MNRRHELCRN FQRGSCKYGA QCRFVHASSQ QQQQQQQQQQ VKPNPFGFGS GSRQQQQQPS 60 FGAQFQQQQQ QQQQQQKPNP FGFGVQGAAK PFQNKWVRDP SAPTKQPEAA QPPAAAHTSC 120 TDPESCRQQI AEDFKNETPL WKLTCYAHLR SGPCDIKGDI SFEELRAKAY EDGRQGHPLQ 180 SIVEGERNLQ NAKLMEFTNF LNNPRVSVSQ TPSFPTVASF PEVKNNPSFG VPQTSGPPVF 240 SSFSQVGAGN NFGPGPRTAP GNPTNTLFGQ PVQASPPAFP APTFGRSDMK FGVSGSFGSQ 300 VSQQPSAGSS MSNVGNFPKP PAGYQQSASS SHHRDIDRQS QDLLSGIVAP TSALNQAPVE 360 DNKNENQDDS IWLKEKWSIG EIPLGEPPQR HISHVF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator that binds double-stranded DNA and the single-stranded RNA polymers poly(rA), poly(rU) and poly(rG), but not poly(rC). Mediates optimal plant architecture through brassinosteroid (BR) signaling. May act as a negative regulator in sterol homeostasis (PubMed:18953406). Acts as negative regulator of BR signaling. Binds to the specific DNA sequence 5'-CTCGC-3' of BZR1 promoter and negatively regulates BZR1. Acts as an antagonistic transcription factor of BZR1 to attenuate the BR signaling pathway and regulate leaf bending. Represses the expression of ILI1, and activates that of IBH1 to balance the regulation activity of BZR1 (PubMed:22570626). {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by 24-epibrassinolide. {ECO:0000269|PubMed:18953406, ECO:0000269|PubMed:22570626}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU956931 | 0.0 | EU956931.1 Zea mays clone 1577703 nucleic acid binding protein mRNA, complete cds. |