PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G277800.4.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 315aa    MW: 36371.9 Da    PI: 6.7476
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G277800.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.7e-08197240146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r +W++ + +l++++ +q+G++ ++ I + ++  +t+ q++ ++ +
  Sevir.4G277800.4.p 197 RAKWSKSDTDLFYQGLQQFGSD-FAMIQQLLP-AKTRHQVRAKFKN 240
                         569*******************.*********.9*******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.21E-10188245IPR009057Homeodomain-like
PfamPF159635.1E-25190272No hitNo description
PROSITE profilePS5129310.277195246IPR017884SANT domain
SMARTSM007171.0E-6196244IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-5197240IPR009057Homeodomain-like
CDDcd001674.22E-5199240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MKLRCREKLQ KVGTPKHTGV DCFDEACVEH SLVEEDNDSG EDYIAGVKKK FTKKPRAGVE  60
EPQQQEVQKD KSQVSSGGWN TTLKDALVQK PEKKLTHRIH QKRMKEVKTL LETPREEIDP  120
MKLSAAHLRL LQEARERVNA KELPSVPSSN TRFQLEDMDD LDYIHEEARN FDNDKTENHI  180
QNVTKLNYNS YMNIQTRAKW SKSDTDLFYQ GLQQFGSDFA MIQQLLPAKT RHQVRAKFKN  240
EEKKNPLQVH DAISHRSGDY LYFKKVIEQL NIEDELPEIN STHREEGASN EGGPGNEFFL  300
GQTQTMFMMM NLFS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G277800.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966290.10.0transcription factor TFIIIB component B'' isoform X2
TrEMBLA0A368QYI40.0A0A368QYI4_SETIT; Uncharacterized protein
STRINGPavir.Bb01981.1.p1e-151(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.12e-32MYB_related family protein