PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G277800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 331aa    MW: 38410.7 Da    PI: 5.3449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G277800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.3e-08198241146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r +W++ + +l++++ +q+G++ ++ I + ++  +t+ q++ ++ +
  Sevir.4G277800.1.p 198 RAKWSKSDTDLFYQGLQQFGSD-FAMIQQLLP-AKTRHQVRAKFKN 241
                         569*******************.*********.9*******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.73E-10189246IPR009057Homeodomain-like
PfamPF159635.6E-25191273No hitNo description
PROSITE profilePS5129310.277196247IPR017884SANT domain
SMARTSM007171.0E-6197245IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-5198241IPR009057Homeodomain-like
CDDcd001679.12E-5200241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKLRCREKLQ KVGTPKHTGV DCFDEACVEH SLVEEDNDSG EDYIAGVKKK FTKKPRAGVE  60
EPQQQEVQKD KSQVSSGGWN TTLKDALVQK PEKKLTHRIH QKRMKEVKTL LETPREEIDP  120
MKLSAAHLRL LQEARERVNA KELPSVPSSN TSRFQLEDMD DLDYIHEEAR NFDNDKTENH  180
IQNVTKLNYN SYMNIQTRAK WSKSDTDLFY QGLQQFGSDF AMIQQLLPAK TRHQVRAKFK  240
NEEKKNPLQV HDAISHRSGD YLYFKKVIEQ LNIEDELPEI NSTHREEDGF INEEDAHWSD  300
EERGVQMPDV QEVHVSGNDD DNLGDIFDWY *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G277800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966289.10.0transcription factor TFIIIB component B'' isoform X1
TrEMBLA0A368QYJ30.0A0A368QYJ3_SETIT; Uncharacterized protein
STRINGPavir.Bb01981.1.p1e-155(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.18e-33MYB_related family protein