PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G276300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 305aa MW: 33903.3 Da PI: 7.8582 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.4 | 1.7e-50 | 13 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lppGfrFhP+d+elv +yL+kk+ g + + ++ +vd++k+ePwdLp + + kewyf+s rd+kyatg+r+nrat+ Sevir.4G276300.1.p 13 LPPGFRFHPRDDELVLDYLAKKLGGGGggggaavV---SiygcpTMVDVDLNKCEPWDLPDIACIGGKEWYFYSLRDRKYATGQRTNRATD 100 79**********************99988887663...133443699*************6555689************************ PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Sevir.4G276300.1.p 101 SGYWKATGKDRPISR-KGLLVGMRKTLVFYQGRAPKGKKTEWVMHEFRM 148 *************99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.22E-59 | 3 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.777 | 13 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-25 | 14 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MAMNSLSMVE ARLPPGFRFH PRDDELVLDY LAKKLGGGGG GGGAAVVSIY GCPTMVDVDL 60 NKCEPWDLPD IACIGGKEWY FYSLRDRKYA TGQRTNRATD SGYWKATGKD RPISRKGLLV 120 GMRKTLVFYQ GRAPKGKKTE WVMHEFRMEG QGDPMKLPFK EDWVLCRVFY KSRATIAKPP 180 TESSSYNIDA ATTSLPPLID NYNISFDQPG SVQNLEGYEQ VPCFSNNPSH QPSSSMNAPL 240 SSSAMADQAE QHMAGKSIKD VLMSQFSRFE GNVVKRETPQ SNFSQDGFEY LAESGFTQMW 300 NSFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-49 | 9 | 172 | 11 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G276300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065512 | 0.0 | BT065512.1 Zea mays full-length cDNA clone ZM_BFb0202I06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022681432.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 9e-87 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | K3XYG7 | 0.0 | K3XYG7_SETIT; Uncharacterized protein | ||||
STRING | Si006975m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 4e-88 | NAC domain containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G276300.1.p |