PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G275200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 638aa    MW: 69767.7 Da    PI: 6.6965
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G275200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.2e-06115135526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C+ +   G+C+ G++C++ H+
  Sevir.4G275200.1.p 115 ECNMYKM-GFCPNGPSCRYKHV 135
                         6666666.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2025683IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-55682IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-55783IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-65781IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.59684109IPR000571Zinc finger, CCCH-type
SMARTSM003560.0184110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.934110137IPR000571Zinc finger, CCCH-type
SMARTSM003560.0042112136IPR000571Zinc finger, CCCH-type
PROSITE profilePS5088257.393245380IPR007275YTH domain
PfamPF041466.8E-44245379IPR007275YTH domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:1900363Biological Processregulation of mRNA polyadenylation
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0004521Molecular Functionendoribonuclease activity
GO:0005516Molecular Functioncalmodulin binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MDDGDGGLSF DFEGGLDSAP AGGAGGPVPS STDPGAGGGG GGDGPGMHGR GRGRGSYRQT  60
VCRHWLRGLC MKGDACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK  120
MGFCPNGPSC RYKHVKLPGP PPPVEEVLQK ILQMRSFNRY GQNRNNNYNQ QGERPQHPQG  180
SGLPNQNSAE NATATAPPTG GQQAQITNQQ PPQQQQKPNT NDQVQGASNG HQTTRIATPL  240
PQGPSRYFIV KSCNRENLEI SVQQGIWATQ RSNEAKLNEA FESTENVILI FSINRTRHFQ  300
GCAKMTSRIG GYIGGGNWKS AHGTAHYGRN FSMQWLKLCE LSFQKTHHLR NPYNDNLPVK  360
ISRDCQELEP FIGEQLASLL YLEPDSELTA MLIAAEAKRE EEKAKGVSAD EAADNQDIVL  420
FDDNEEEEEE ESEEEEESNG QESQGRGRGR GMMWPPQMPM MRGPMMGGRF PPNMIGDGFG  480
FGGGFGMPDP FGMPRGFPPF GGPRFPGDFP RGPMPGMAFP GRPPQPFPLG LDMMMGPGRG  540
PMMGGMGMGG PGRPNRPMGM APFMPPPPPN NRAAKREQRR PGGDRFETVS DQGSRGHENS  600
GADGARSQSG DRYSRSALRD DDSESEEEAA PRRSRKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zuu_A1e-101232408418030-kDa cleavage and polyadenylation specificity factor 30
5zuu_B1e-101232408418030-kDa cleavage and polyadenylation specificity factor 30
5zuu_C1e-101232408418030-kDa cleavage and polyadenylation specificity factor 30
5zuu_D1e-101232408418030-kDa cleavage and polyadenylation specificity factor 30
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G275200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966206.10.0zinc finger CCCH domain-containing protein 45
SwissprotQ0DA500.0C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45
TrEMBLK3XVT80.0K3XVT8_SETIT; Uncharacterized protein
STRINGSi006046m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59892428