PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G264800.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 190aa MW: 19939 Da PI: 5.8473 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.2 | 1e-18 | 16 | 65 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g Sevir.4G264800.5.p 16 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 65 59*******.7*********83...36*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.02E-17 | 16 | 75 | No hit | No description |
Pfam | PF00847 | 5.8E-12 | 16 | 65 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.168 | 16 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 16 | 75 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 16 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.9E-35 | 16 | 79 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-8 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-8 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MRRAKPPQPS PSPEIRYRGV RRRPSGRYAA EIRDPAKKTP IWLGTFDSAE AAARAYDAAA 60 RSLRGPTART NFPASAPPRH SRPPASAAAA AATSSHSSTV ESWSGGATRV ATAALARSAA 120 APMEEEEDEE DCRSYCGSSS SVLCEDDGGD DDAAASRAPL PFDLNLPPPL DAAAEADQMG 180 ARYDTLLRL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 16 | 73 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G264800.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953833 | 1e-142 | EU953833.1 Zea mays clone 1447216 ethylene-responsive transcription factor 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966181.1 | 5e-84 | ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_022681405.1 | 5e-84 | ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A368QY24 | 1e-82 | A0A368QY24_SETIT; Uncharacterized protein | ||||
STRING | GRMZM2G175543_P01 | 9e-76 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 5e-10 | ethylene response factor 7 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G264800.5.p |