PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G264800.3.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

ERF

Protein Properties

Length: 190aa MW: 19939 Da PI: 5.8473

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G264800.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.2	1e-18	16	65	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp k++ ++lg+f++ae Aa+a++aa+++l+g Sevir.4G264800.3.p 16 RYRGVRRRP-SGRYAAEIRDPA---KKTPIWLGTFDSAEAAARAYDAAARSLRG 65 59*****.7*****83...36***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	6.02E-17	16	75	No hit	No description
Pfam	PF00847	5.8E-12	16	65	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.168	16	73	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-21	16	75	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.2E-29	16	75	IPR001471	AP2/ERF domain
SMART	SM00380	9.9E-35	16	79	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-8	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	7.7E-8	39	55	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MRRAKPPQPS PSPEIRYRGV RRRPSGRYAA EIRDPAKKTP IWLGTFDSAE AAARAYDAAA 60 RSLRGPTART NFPASAPPRH SRPPASAAAA AATSSHSSTV ESWSGGATRV ATAALARSAA 120 APMEEEEDEE DCRSYCGSSS SVLCEDDGGD DDAAASRAPL PFDLNLPPPL DAAAEADQMG 180 ARYDTLLRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-19	16	73	14	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G264800.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953833	1e-142	EU953833.1 Zea mays clone 1447216 ethylene-responsive transcription factor 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966181.1	5e-84	ethylene-responsive transcription factor 3-like
Refseq	XP_022681405.1	5e-84	ethylene-responsive transcription factor 3-like
TrEMBL	A0A368QY24	1e-82	A0A368QY24_SETIT; Uncharacterized protein
STRING	GRMZM2G175543_P01	9e-76	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20310.1	5e-10	ethylene response factor 7

Link Out ? help Back to Top
Phytozome	Sevir.4G264800.3.p