PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G252600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 359aa    MW: 39519.3 Da    PI: 7.1574
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G252600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.51.3e-192511857128
                 NAM  57 ewyfFskrdkkyatgkrknra.....................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmh 124
                         + +fF++ +k+y+tg+rk+r+                      ++ +W++tgk+++v++  g++ g+kk+Lv+y   g+++++ kt+Wvmh
  Sevir.4G252600.2.p  25 SRHFFHRPSKAYTTGTRKRRKiqppaaeassssspaaqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPDKTNWVMH 114
                         67******************88**************99998755789************.9999**********5547999999******* PP

                 NAM 125 eyrl 128
                         +y+l
  Sevir.4G252600.2.p 115 QYHL 118
                         **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100519.3261137IPR003441NAC domain
SuperFamilySSF1019417.59E-2221137IPR003441NAC domain
PfamPF023652.7E-727118IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MHMHLHMLTS IYTNGHAGLT KDGLSRHFFH RPSKAYTTGT RKRRKIQPPA AEASSSSSPA  60
AQQQQQRSET RWHKTGKTRP VVVAGRQRGC KKILVLYTNF GKHRRPDKTN WVMHQYHLGD  120
NEEEREGELV VSKIFYQTQP RQCGVAAEPA AAAASSDTVD GAAGAEQVAE AAVAPPDVGG  180
AFHGATGIDE FNFTQFRSSF EEVDVGTSVQ VSARADEEVH TGHLHLHQEH DLHRRQYTNQ  240
EQQRLAAAAA AFQISTPTEP ITTMITSSPM VHHGSVLLQQ QEPYDHGASY QQQQQEDEQP  300
HQPSNFDGRS TSGLEEVIMG CTSRRSRGGE ASGSGGNKES SNWQYPSFWP PGSQDHHG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G252600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697751e-156EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966092.10.0uncharacterized protein LOC101753253
TrEMBLA0A368QXL40.0A0A368QXL4_SETIT; Uncharacterized protein
TrEMBLK3XWX70.0K3XWX7_SETIT; Uncharacterized protein
STRINGSi006435m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.12e-59NAC domain containing protein 99