PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G252600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 458aa    MW: 50110.1 Da    PI: 6.5771
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G252600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.5e-33602171128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 
                         lp+G++F+Ptd+el+ e+L++kv+  +        ++++  +i+   +i++++P++Lp  ++++  + +fF++ +k+y+tg+rk+r+    
  Sevir.4G252600.1.p  60 LPAGVKFDPTDQELI-EHLQAKVRPGStaapshplIDEFIpTIEGEdGICYTHPEKLP-GLTKDGLSRHFFHRPSKAYTTGTRKRRKiqpp 148
                         799************.99*****9998676665543333333776646**********.455566799******************88*** PP

                 NAM  78 .................tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                           ++ +W++tgk+++v++  g++ g+kk+Lv+y   g+++++ kt+Wvmh+y+l
  Sevir.4G252600.1.p 149 aaeassssspaaqqqqqRSETRWHKTGKTRPVVV-AGRQRGCKKILVLYtnFGKHRRPDKTNWVMHQYHL 217
                         ***********99998755789************.9999**********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-3654236IPR003441NAC domain
PROSITE profilePS5100530.07560236IPR003441NAC domain
PfamPF023653.4E-1561217IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MGSWQQGELQ ATAMDGAGSG GGNHRLIGLR IEEYGKYISD STCCPQCGHK IDRKLDWVGL  60
PAGVKFDPTD QELIEHLQAK VRPGSTAAPS HPLIDEFIPT IEGEDGICYT HPEKLPGLTK  120
DGLSRHFFHR PSKAYTTGTR KRRKIQPPAA EASSSSSPAA QQQQQRSETR WHKTGKTRPV  180
VVAGRQRGCK KILVLYTNFG KHRRPDKTNW VMHQYHLGDN EEEREGELVV SKIFYQTQPR  240
QCGVAAEPAA AAASSDTVDG AAGAEQVAEA AVAPPDVGGA FHGATGIDEF NFTQFRSSFE  300
EVDVGTSVQV SARADEEVHT GHLHLHQEHD LHRRQYTNQE QQRLAAAAAA FQISTPTEPI  360
TTMITSSPMV HHGSVLLQQQ EPYDHGASYQ QQQQEDEQPH QPSNFDGRST SGLEEVIMGC  420
TSRRSRGGEA SGSGGNKESS NWQYPSFWPP GSQDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G252600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697750.0EU969775.1 Zea mays clone 335447 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966092.10.0uncharacterized protein LOC101753253
SwissprotQ9M0F81e-106NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A368QXL40.0A0A368QXL4_SETIT; Uncharacterized protein
STRINGSi006435m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-104NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]