PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G251700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 474aa    MW: 50288.7 Da    PI: 7.1318
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G251700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.2e-094084461854
                         HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         +Fe+   +yp+ +e+e LA++ gL+ +qV++WF N R +
  Sevir.4G251700.1.p 408 MFENflRPYPKDNEKEMLAARSGLSRSQVSNWFINARVR 446
                         57766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.4E-14209339IPR006563POX domain
PROSITE profilePS5007111.953387450IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-26389463IPR009057Homeodomain-like
SuperFamilySSF466895.13E-16390459IPR009057Homeodomain-like
SMARTSM003891.6E-7390454IPR001356Homeobox domain
CDDcd000865.87E-12390451No hitNo description
PfamPF059206.2E-16407446IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MTGDASYQQL GVDNTMMSGC FGSGGGGGAP VFHDGSLFGF GEPADAAASF LVDGGSMLAG  60
QLQLIRAAAP QSVSPVETAR GAYGGYEPSP SDVTVAHAPK VAKHLAGEME GSWIHEPYCC  120
PTWFFSGDGF RDPFAAAASE LSLRLRRAES SPTGAVHVSL PDQSPEVSCS GLTHASSSAG  180
TGGGVFQPPC GGGGEMAPLH FSQVLPRWSA YAHLTQKTLD EFVGCLLQDV AGFAGSVAGC  240
EASCLLPMSS CSKTTSSNPS VFLGSEEHAH QKLRNDLQKL LQLLDQRCNQ CMDEIQGAAS  300
KYGGMVRPGG GGGGATLLLA PFAHRAVSAM HRRLRARITG EIAAASRRGE PPPPTSASLT  360
LADRERSWES AFIQKHWALR QLRRGDQQSW RPQRGLPEKS VAVLKAWMFE NFLRPYPKDN  420
EKEMLAARSG LSRSQVSNWF INARVRLWKP MIEEMYEDLK KASGSGGDEG VAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G251700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012700583.10.0homeobox protein ATH1
RefseqXP_012700585.10.0homeobox protein ATH1
TrEMBLK3XWQ00.0K3XWQ0_SETIT; Uncharacterized protein
STRINGSi006358m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-46homeobox gene 1