PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G250400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 330aa    MW: 35584.1 Da    PI: 5.5051
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G250400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.31.6e-30441342101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k++e++e+++++ ++sw    nsfvv+d++ fa  +Lp+ Fkh nf+ F+RQLn+YgF+kv+ ++         weF+h  F +g+++
  Sevir.4G250400.1.p  44 FVAKTFELVENPATDGVVSWGPARNSFVVWDPHAFAAVLLPRLFKHANFSTFLRQLNTYGFRKVSPDR---------WEFAHADFLAGQRH 125
                         9********************999******************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll +i+r++
  Sevir.4G250400.1.p 126 LLANIRRRR 134
                         *******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.3E-5140133IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3141133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.0E-3441133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.6E-2844133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-154467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-158294IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-1595107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDHPAAATVK HPDEVLVVLD TDGDAGGRAG AAPEPWKLAA VPPFVAKTFE LVENPATDGV  60
VSWGPARNSF VVWDPHAFAA VLLPRLFKHA NFSTFLRQLN TYGFRKVSPD RWEFAHADFL  120
AGQRHLLANI RRRRGAAGVG YKAAKTASIA TGSGGREKEL EKLRREREAL ARELARLRRE  180
QQEARAQLRD VERRVRGTER RQEQCAAAFL ARAVGDPAAA DETGRKRRRL DADATSTTPG  240
VADVLAFVEL ALAAGAEAES APMPAMASAH STGAATNLDM VWNELLGEEP VAIDAKADQE  300
LAAAAVEPWE EMSGEEALEL VEIDCLASP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-243913315120Heat shock factor protein 1
5d5u_B7e-243913324129Heat shock factor protein 1
5d5v_B7e-243913324129Heat shock factor protein 1
5d5v_D7e-243913324129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224228RKRRR
2225229KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G250400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0854475e-51BT085447.2 Zea mays full-length cDNA clone ZM_BFc0014C20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966067.10.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A42e-87HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLK3XY670.0K3XY67_SETIT; Uncharacterized protein
STRINGSi006875m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-52heat shock transcription factor A2