PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G247400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bHLH
Protein Properties Length: 560aa    MW: 60261.5 Da    PI: 7.8761
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G247400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12373417554
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         h + ErrRR+r+N++f++Lr llP+       K +Ka++L  ++eY+++L
  Sevir.4G247400.1.p 373 HMISERRRRERLNESFQTLRALLPPG-----SKKDKATVLANTTEYMHKL 417
                         8899********************95.....599************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.605368417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15370437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15372435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10373417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12374423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.12E-5383417No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MAPRTLSSDE RDTRVALFMD AIFALAAGPR ARVLERAATR IPGCLYIFLW APVIAGHLPP  60
SSLFRCVDAW ISNTAAPAGG DRAREVFEAY RRSFCAIVSG CVPGWAYKDG RPYMELPEPD  120
LTASASLQVQ QQFYHEAGTK TAVFMSCDHG EIEVGLSSAP APPAVANHVQ ESLLEEFMQL  180
TPAVPSSSSS SLPSLSIGSP EYSSLIRSMA TTAAAEPSSQ ERQPLPLHPA VQLPGLLLPV  240
YGHAPFLAPE DEDAAIAEAM LAVISSSAPQ PPAPTDVPPS PPWLARHRAQ RWSPRRRAPG  300
AFRAYCSALS PRARPRPGAP GQRMAKTAIA LMLSVHMAMR DRELAAARRQ EDAAAGQPPA  360
PQQQQHTSSQ LHHMISERRR RERLNESFQT LRALLPPGSK KDKATVLANT TEYMHKLIAD  420
VADLEKKNRH LEAQIGLPLE TQQAGSDDSS ERVQVDVTTG ASTSTSTSAA GQAQEVSIRV  480
TVRAECDLPE VVIAILARIK KMGRFAVVTV DARQRSSRHA QVSITLRLTA GSDEADETSL  540
KEAVAKAVED AVARPPSPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376381ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G247400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681563.10.0putative transcription factor bHLH041
TrEMBLK3Y1B70.0K3Y1B7_SETIT; Uncharacterized protein
STRINGSi007981m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-16bHLH family protein