PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G226300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 29990.8 Da PI: 8.5042 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.1 | 3.7e-09 | 123 | 170 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++e L+el+P +s k a +L + +++++sLq Sevir.4G226300.2.p 123 SHSLAERARREKINARMELLKELVPGCS----KVSGTALVLDEIINHVQSLQ 170 8*************************94....22445556666666666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-15 | 117 | 188 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.22E-9 | 117 | 174 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 119 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.627 | 119 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 123 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-8 | 125 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MELLLPRAAA APPAPAPAPA PAPTFPSDPH LVDRAARFSA FASPSPSSPS PTPPPPPPPA 60 PPAAAAAANA GKRKADQPAD RASKGKSAKK GKTAEEKPAG GDGEDEKPAY VHVRARRGQA 120 TDSHSLAERA RREKINARME LLKELVPGCS KVSGTALVLD EIINHVQSLQ RQVEYLSMRL 180 AAVNPRVDFG GLDSFLTTEC GRIAGLNCKN GIDLEQVTWP EMGVHGARHL MQLQQQFWHG 240 DLAHPHQAPS QWEKRGDGHP PVFSSSSPSL FGYDLTSSGS EM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G226300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040729 | 0.0 | BT040729.1 Zea mays full-length cDNA clone ZM_BFc0120O20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701081.3 | 0.0 | transcription factor bHLH48 | ||||
Swissprot | Q8VZ02 | 4e-56 | BH048_ARATH; Transcription factor bHLH48 | ||||
TrEMBL | K3XXX3 | 0.0 | K3XXX3_SETIT; Uncharacterized protein | ||||
STRING | Si006781m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57800.2 | 3e-51 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G226300.2.p |
Publications ? help Back to Top | |||
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