PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G225800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 702aa    MW: 75846.5 Da    PI: 5.7609
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G225800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.11.7e-27192245155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         +pr++W  +LH++Fveav+q+ G ++A+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Sevir.4G225800.1.p 192 RPRVQWPGDLHRKFVEAVNQI-GMDRAVPKKILEVMNVDGLTRENVASHLQKYRI 245
                         59*******************.********************************7 PP
2Response_reg78.32.7e-26121211108
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH....ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd....pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 
                         vl vdD+++ +++l++ l++ +y +v+++++++eal++l+e++    ++l++ D+ mp+mdG++ll+ i  e  ++p+i+++a++e e++ 
  Sevir.4G225800.1.p  12 VLAVDDDRVSLKILEKQLKHCNY-NVTAVTHAKEALDMLRERKvgdqFELVISDVVMPDMDGFKLLELIGLEM-DIPVIMLSANDETETVM 100
                         799********************.*****************99999***********************6644.8**************** PP

                         HHHHTTESEEEESS--HHHHH CS
        Response_reg  88 ealkaGakdflsKpfdpeelv 108
                         + ++ Ga d+l+Kp+  e+l+
  Sevir.4G225800.1.p 101 KGINHGACDYLVKPVRLEQLR 121
                         ******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.7E-359132IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-419152No hitNo description
SMARTSM004481.7E-3010124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.56911128IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.1E-2312121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.76E-2913128No hitNo description
PROSITE profilePS512949.576189248IPR017930Myb domain
SuperFamilySSF466892.15E-18190249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-28190250IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23193245IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDAGKFPAGM RVLAVDDDRV SLKILEKQLK HCNYNVTAVT HAKEALDMLR ERKVGDQFEL  60
VISDVVMPDM DGFKLLELIG LEMDIPVIML SANDETETVM KGINHGACDY LVKPVRLEQL  120
RGVWTHVLRN SKTDPRNSTS GGNDDADQKL QSGDGDKGER DGANQNRRNS KKKKNDVDGA  180
DEGKENTSPQ KRPRVQWPGD LHRKFVEAVN QIGMDRAVPK KILEVMNVDG LTRENVASHL  240
QKYRIYLKKL SEGKLKNSSP FADGPKAWRC DWVPANSDTN VVESSNHHPE LGRYQSASYF  300
VGSPSSSNVF ARMNSPSAFG AYTFLPTQSV QLMSSQRNFG IPRQDAEPVS HGVNVNLSDA  360
SQCFPNISNG AVFNTSKPSG PSGSSFTNIS NGAEFNTRKP LSLGISGSSI ANTSSDIPTL  420
SSSMHFPSHR SCSSYASILR GKILGARRGI PFEDIADGEM LAPSGHLPLQ SPEFNNQPSV  480
QIQSPSAGLF NQVAREADAG QFAGLINCSN SWKAAALSRF PDLTHNVGMS NGPSQGNIIK  540
MNKLSRLAAS SGQIPTFGNE YHNQIAGIIG KTAPALSFSE QVAPFNFGSN THYTAMPIGN  600
SDLGSSSSTR PALPNLQIDN SVMPTEMLNG EDTSGNLPEG GTINQQPVGD QVINSNEFLM  660
GTCEVQNGAS GDLDDFLTDW VNEDFVNNGD AFSGGDWDFA P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-23188251164ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G225800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681872.10.0two-component response regulator ORR25
TrEMBLA0A368QYL20.0A0A368QYL2_SETIT; Uncharacterized protein
STRINGSi007844m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.17e-83response regulator 12