PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G224600.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 273aa    MW: 28242.3 Da    PI: 9.7835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G224600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.15.7e-07630226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k ++C  f+ t  C++G++C+F H 
  Sevir.4G224600.3.p  6 KSKPCTKFFSTAGCPFGASCHFLHN 30
                        7789********************7 PP
2zf-CCCH20.21e-067297227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+ C+ +     Ck G++C+FaHg+
  Sevir.4G224600.3.p 72 KTRMCNKYNTAEGCKWGSKCHFAHGE 97
                        89**********************96 PP
3zf-CCCH36.76.9e-12238263127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC +f + G C +GdrC+FaHg+
  Sevir.4G224600.3.p 238 FKTKLCENFNK-GSCTFGDRCHFAHGE 263
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575125No hitNo description
SMARTSM003560.3431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.915432IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-8630IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6632IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-5630IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1466102IPR000571Zinc finger, CCCH-type
SMARTSM003561.47097IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5587098IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-870101IPR000571Zinc finger, CCCH-type
SuperFamilySSF547919.94E-14139211IPR004088K Homology domain, type 1
SMARTSM003222.1E-9141211IPR004087K Homology domain
PROSITE profilePS5008414.592142206IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.7E-14142210IPR004088K Homology domain, type 1
CDDcd001056.62E-13144206No hitNo description
PfamPF000131.6E-10144207IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.104.5E-17236269IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-9237268IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7237263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131237264IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGVGSKSKPC TKFFSTAGCP FGASCHFLHN FPGGYQAVAK MTNLGGPPVP APPARMPMGH  60
GAPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPMQMDNSM GAPPMGPGPN  120
GHFMAPPMPV PDMVPPSTFG ASATAKISVD ASLAGGIIGK GGTNTKHISR VTGAKLAIRD  180
NEADPNLKNI ELEGTFDQIK HASAMVTDLI VRISGKAPPQ AKNNPGRGPH AGGAGSNFKT  240
KLCENFNKGS CTFGDRCHFA HGESELRKPA AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G224600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
GenBankJX4699750.0JX469975.1 Zea mays subsp. mays clone UT3238 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965878.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ31e-162C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A368QWN40.0A0A368QWN4_SETIT; Uncharacterized protein
STRINGSi006771m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-62C3H family protein