PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G224600.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 233aa    MW: 24093.5 Da    PI: 9.6717
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G224600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-073257227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                        kt+ C+ +     Ck G++C+FaHg+
  Sevir.4G224600.2.p 32 KTRMCNKYNTAEGCKWGSKCHFAHGE 57
                        89**********************96 PP
2zf-CCCH375.5e-12198223127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC +f + G C +GdrC+FaHg+
  Sevir.4G224600.2.p 198 FKTKLCENFNK-GSCTFGDRCHFAHGE 223
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-142662IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-83061IPR000571Zinc finger, CCCH-type
SMARTSM003561.43057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.5583058IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.16E-1499171IPR004088K Homology domain, type 1
SMARTSM003222.1E-9101171IPR004087K Homology domain
PROSITE profilePS5008414.592102166IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.2E-14102170IPR004088K Homology domain, type 1
PfamPF000131.2E-10104167IPR004088K Homology domain, type 1
CDDcd001054.21E-13104166No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-17196229IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-9197228IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131197224IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7197223IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9198223IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MTNLGGPPVP APPARMPMGH GAPDGPPSPA VKTRMCNKYN TAEGCKWGSK CHFAHGEREL  60
GKPMQMDNSM GAPPMGPGPN GHFMAPPMPV PDMVPPSTFG ASATAKISVD ASLAGGIIGK  120
GGTNTKHISR VTGAKLAIRD NEADPNLKNI ELEGTFDQIK HASAMVTDLI VRISGKAPPQ  180
AKNNPGRGPH AGGAGSNFKT KLCENFNKGS CTFGDRCHFA HGESELRKPA AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G224600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
GenBankJX4699750.0JX469975.1 Zea mays subsp. mays clone UT3238 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965878.11e-169zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ31e-133C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A368QWM01e-168A0A368QWM0_SETIT; Uncharacterized protein
TrEMBLA0A368QWN41e-167A0A368QWN4_SETIT; Uncharacterized protein
STRINGSi006771m1e-168(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-46C3H family protein