PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G224600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C3H
Protein Properties Length: 303aa    MW: 31235.6 Da    PI: 10.0293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G224600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.5e-073660226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        k ++C  f+ t  C++G++C+F H 
  Sevir.4G224600.1.p 36 KSKPCTKFFSTAGCPFGASCHFLHN 60
                        7789********************7 PP
2zf-CCCH201.2e-06102127227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         kt+ C+ +     Ck G++C+FaHg+
  Sevir.4G224600.1.p 102 KTRMCNKYNTAEGCKWGSKCHFAHGE 127
                         89**********************96 PP
3zf-CCCH36.57.9e-12268293127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +kt+lC +f + G C +GdrC+FaHg+
  Sevir.4G224600.1.p 268 FKTKLCENFNK-GSCTFGDRCHFAHGE 293
                         69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9153462IPR000571Zinc finger, CCCH-type
SMARTSM003560.33461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-63562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-83660IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1496132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-8100131IPR000571Zinc finger, CCCH-type
SMARTSM003561.4100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.21E-13169241IPR004088K Homology domain, type 1
SMARTSM003222.1E-9171241IPR004087K Homology domain
PROSITE profilePS5008414.592172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.0E-14172240IPR004088K Homology domain, type 1
PfamPF000131.9E-10174237IPR004088K Homology domain, type 1
CDDcd001051.04E-12174236No hitNo description
Gene3DG3DSA:4.10.1000.105.3E-17266299IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9267298IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7267293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131267294IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9268293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDAAGRKRAA PEGANGAGGP KRAREGETTQ MGVGSKSKPC TKFFSTAGCP FGASCHFLHN  60
FPGGYQAVAK MTNLGGPPVP APPARMPMGH GAPDGPPSPA VKTRMCNKYN TAEGCKWGSK  120
CHFAHGEREL GKPMQMDNSM GAPPMGPGPN GHFMAPPMPV PDMVPPSTFG ASATAKISVD  180
ASLAGGIIGK GGTNTKHISR VTGAKLAIRD NEADPNLKNI ELEGTFDQIK HASAMVTDLI  240
VRISGKAPPQ AKNNPGRGPH AGGAGSNFKT KLCENFNKGS CTFGDRCHFA HGESELRKPA  300
AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G224600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0342660.0BT034266.1 Zea mays full-length cDNA clone ZM_BFc0007J14 mRNA, complete cds.
GenBankBT0848330.0BT084833.1 Zea mays full-length cDNA clone ZM_BFb0189L10 mRNA, complete cds.
GenBankJX4699750.0JX469975.1 Zea mays subsp. mays clone UT3238 C3H-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965878.10.0zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ31e-174C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A368QWN40.0A0A368QWN4_SETIT; Uncharacterized protein
STRINGPavir.Db00748.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-63C3H family protein