PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G223800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 293aa MW: 32586.7 Da PI: 9.3465 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.2 | 6.9e-12 | 126 | 171 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g WT E+ l++++ + +G g+Wk I++++ ++Rt+ q+ s+ qky Sevir.4G223800.1.p 126 GFWTMPEHRLFLRGLQVYGRGNWKNISKYFVTTRTPVQVSSHAQKY 171 67*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 77 | 6 | 68 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.881 | 120 | 176 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-10 | 121 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.0E-9 | 124 | 174 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.48E-15 | 125 | 175 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-13 | 128 | 174 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 3.52E-8 | 128 | 172 | No hit | No description |
Pfam | PF00249 | 2.8E-9 | 128 | 171 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDPTKTNGEW SASEIKIVKS LIARYKANKN YTADMNKKHS DIINEVHAMF PLKERLQVIS 60 LYVDLIVEMM QSTTDNSSYY FVAASRDLVN NNFEIPVEDP AIDNMRVSQA VPLRQSAPRM 120 QRLRTGFWTM PEHRLFLRGL QVYGRGNWKN ISKYFVTTRT PVQVSSHAQK YFRRIGNNAR 180 KQRYSINDIG LYDAEPWAQN NNSDWEGFIT SGAYNSNHIG AGGQHATMNN LAQVQPPILY 240 HASQASSSSQ VTTLAIDKKI GAASSSVALV IEGAGSSQAA CLGDQLGDFL SD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G223800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004967177.1 | 0.0 | myb-like protein H | ||||
TrEMBL | K3XYL4 | 0.0 | K3XYL4_SETIT; Uncharacterized protein | ||||
STRING | Si007022m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-21 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G223800.1.p |