PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G216000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 403aa    MW: 43899.1 Da    PI: 11.3238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G216000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.85.5e-08189233352
                 AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 
                         y+GV  +    r++A +        ++k ++lg++gt+ eAa a++aa+++
  Sevir.4G216000.1.p 189 YHGVQKCG--RRYAATLLN----PfVKKVIWLGSYGTPVEAAYAYDAAARS 233
                         77885444..488888444....2457*********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-7188250IPR001471AP2/ERF domain
PROSITE profilePS5103210.376188244IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-10189244IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.3E-11189245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MVQEPHDRWR YHALEGERWR CGALPGGAAN ERHLTPRRRL LLAHGLRSTP HPREIRRGNL  60
PHRRPRRELG EDGPGPAPKH APRGSGSVVA YLLPRFRTSR YLRSGSTAAS RAGHPSALAT  120
AVACLARSTT LPGMLDRNAS KLSIYSTYRS TPACARRISG SGVELARQAA ARDDVRAARE  180
AAELPTMRYH GVQKCGRRYA ATLLNPFVKK VIWLGSYGTP VEAAYAYDAA ARSVLRHWAR  240
PNFPELSPAA REVAALDLTR MRRAPEPAHQ QQRALRRQAL LIRCWAPAPA GAAPPAFPFQ  300
REVTPQVLRV HYRPGSAATG GELYATPFVP GVHDLNEPMP NAPASIALSS TKPGLAAVAP  360
NRRELPNPSA MAMEPDQSVV GDNFTYVDGA SLPAVPTFGW VW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G216000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967158.11e-121ethylene-responsive transcription factor 12
TrEMBLA0A368QWR21e-129A0A368QWR2_SETIT; Uncharacterized protein
STRINGSi007967m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610