PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G215900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 271aa    MW: 28908.5 Da    PI: 10.3388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G215900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.92.9e-093480152
                 AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkk 52
                        ++y+GV  + +  r++A ++  +     +k ++lg++gta eAa a++aa+++
  Sevir.4G215900.1.p 34 TRYRGVQMRGR--RYAATLWNpF----LKKAIRLGSYGTAVEAAYAYDAAARS 80
                        58****98775..9****99944....35*********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-53479IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-113592IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-103591IPR016177DNA-binding domain
SMARTSM003801.8E-63597IPR001471AP2/ERF domain
PROSITE profilePS5103211.0083591IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MPGPGRVVEL ARQAAAAARA DGRAAREAAV QPATRYRGVQ MRGRRYAATL WNPFLKKAIR  60
LGSYGTAVEA AYAYDAAARS VLWRWARPNF PELSAAPAAR EVSAADLARA RRAAEPARQQ  120
QQAPWRQAPL IRCWVPAPAG AAAQHQERVA PPVFAFRREA APQYMXLHYR PGSAATGGGL  180
YAVAFVPGVP DLNDPVPDTS SSELSSTESG SAPAAPNRRE LPHLPALAVE PDQSMEYVTT  240
PSSGTPTTPA RLIAISIATT ACYPTPWIFL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G215900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967157.18e-91dehydration-responsive element-binding protein 2D
TrEMBLK3Y1201e-120K3Y120_SETIT; Uncharacterized protein
STRINGSi007882m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17311610