PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G198400.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 388aa MW: 43365.3 Da PI: 4.6996 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.2 | 4.2e-33 | 27 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+P+d+el+++ L+k+ ++ + +e+i++v+ i++++P++Lp vk++ + +fF+++ ++y+tg+rk+r+++ Sevir.4G198400.3.p 27 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfI--DEFIPTVEgedgICYTHPQKLP-GVKQNGSVSHFFHRTFRAYNTGTRKRRKINtdd 114 799************998888755544454332..233555533345**********.667778899******************744446 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+vl+ +g++ g+kk++v+y + + k+ekt+Wvmh+y+l Sevir.4G198400.3.p 115 laDVRWHKTGKTKPVLV-EGKHLGCKKIMVLYtsTTKGGKAEKTNWVMHQYHL 166 66899************.9999**********5444667788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.11E-39 | 11 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.588 | 27 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-15 | 28 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MSNPSKECPK CSHVIDNSDV VHQWPGLPKG VKFDPSDQEL LWHLLAKHGK SGIKPHPFID 60 EFIPTVEGED GICYTHPQKL PGVKQNGSVS HFFHRTFRAY NTGTRKRRKI NTDDLADVRW 120 HKTGKTKPVL VEGKHLGCKK IMVLYTSTTK GGKAEKTNWV MHQYHLGTGE DEKEGEYVVS 180 KLFFQQQFKP GEKNAQELTT ADGLESMAAE ADIPDFTTLP SEELVGTIQE IAQNPDHNPY 240 QVNENCEINI QENAAEETVV LPPSEKPEGG DNPQSQDPKL WEGESQFELL DSQQLAEGLA 300 LCDEFLLSQS QTSCGGGDEP RAIKPRLAVY AQLPTEDFKK DLEECQRLEP SDTVNLELDN 360 TTEFRLSQID FSQDSFTTWA GGKIIDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G198400.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965197.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-128 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368QV69 | 0.0 | A0A368QV69_SETIT; Uncharacterized protein | ||||
TrEMBL | K3XXI1 | 0.0 | K3XXI1_SETIT; Uncharacterized protein | ||||
STRING | Si006639m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-131 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G198400.3.p |