PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G198400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 419aa MW: 46798.2 Da PI: 4.8658 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.9 | 4.9e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+P+d+el+++ L+k+ ++ + +e+i++v+ i++++P++Lp vk++ + +fF+++ ++y+tg+rk+r+++ Sevir.4G198400.1.p 58 LPKGVKFDPSDQELLWHLLAKHGKSGIkphpfI--DEFIPTVEgedgICYTHPQKLP-GVKQNGSVSHFFHRTFRAYNTGTRKRRKINtdd 145 799************998888755544454332..233555533345**********.667778899******************744446 PP NAM 80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+vl+ +g++ g+kk++v+y + + k+ekt+Wvmh+y+l Sevir.4G198400.1.p 146 laDVRWHKTGKTKPVLV-EGKHLGCKKIMVLYtsTTKGGKAEKTNWVMHQYHL 197 66899************.9999**********5444667788*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-39 | 42 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.588 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-15 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MTGTTWIIDG QRFATKIKNA SGPSDPSKQK WMSNPSKECP KCSHVIDNSD VVHQWPGLPK 60 GVKFDPSDQE LLWHLLAKHG KSGIKPHPFI DEFIPTVEGE DGICYTHPQK LPGVKQNGSV 120 SHFFHRTFRA YNTGTRKRRK INTDDLADVR WHKTGKTKPV LVEGKHLGCK KIMVLYTSTT 180 KGGKAEKTNW VMHQYHLGTG EDEKEGEYVV SKLFFQQQFK PGEKNAQELT TADGLESMAA 240 EADIPDFTTL PSEELVGTIQ EIAQNPDHNP YQVNENCEIN IQENAAEETV VLPPSEKPEG 300 GDNPQSQDPK LWEGESQFEL LDSQQLAEGL ALCDEFLLSQ SQTSCGGGDE PRAIKPRLAV 360 YAQLPTEDFK KDLEECQRLE PSDTVNLELD NTTEFRLSQI DFSQDSFTTW AGGKIIDD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G198400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004965197.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-142 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368QV69 | 0.0 | A0A368QV69_SETIT; Uncharacterized protein | ||||
STRING | Si006639m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-144 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G198400.1.p |