PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G192000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YB
Protein Properties Length: 198aa    MW: 21157.9 Da    PI: 6.0169
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G192000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB112.32.6e-3526117596
               NF-YB   5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                         ++ +P a v+rim+k+ P n+ki+ dake v++c ++f +fvt+ a++ c+r+kr t++gddl+ a+ +lGf++yv pl++yl++yre+eg
  Sevir.4G192000.1.p  26 EHKIPRATVARIMRKATPPNSKIGADAKEAVDQCLVKFAAFVTQVAAEECRRDKRTTVTGDDLILAFKNLGFDNYVGPLTLYLRRYREIEG 116
                         6789**************************************************************************************9 PP

               NF-YB  96 e 96 
                         +
  Sevir.4G192000.1.p 117 N 117
                         7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.5E-3123127IPR009072Histone-fold
SuperFamilySSF471136.11E-2626118IPR009072Histone-fold
PfamPF008087.9E-172891IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-65674No hitNo description
PRINTSPR006151.2E-67593No hitNo description
PRINTSPR006151.2E-694112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDNQPKNHQD GDPFFLTHAA TEAPEEHKIP RATVARIMRK ATPPNSKIGA DAKEAVDQCL  60
VKFAAFVTQV AAEECRRDKR TTVTGDDLIL AFKNLGFDNY VGPLTLYLRR YREIEGNMPR  120
ARHSTMRSQG APPAPVALTV EAAAAPSSGL TLQLGPPSVP DVTELGLHAD VYVVWRGAGP  180
APAAGTSQAP SCADEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B9e-27291131094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-27291131094NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G192000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966907.11e-115nuclear transcription factor Y subunit B-1
TrEMBLK3Y1031e-133K3Y103_SETIT; Uncharacterized protein
STRINGSi007865m1e-134(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140561326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-33nuclear factor Y, subunit B3