PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G149400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 26353.8 Da PI: 4.6391 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.3 | 7.7e-18 | 34 | 79 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa++ Sevir.4G149400.1.p 34 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALV 79 9****998.**********843...6*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.5E-12 | 32 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-31 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-21 | 33 | 90 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.182 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-35 | 33 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-19 | 34 | 91 | No hit | No description |
PRINTS | PR00367 | 1.2E-10 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-10 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MPDSDAASPA SLPAGVEKKG GRGRKSGGGW RPAYRGVRMR AWGKWVSEIR EPRKKSRIWL 60 GTFPTAEMAA RAHDAAALVV KGPAAVLNFP EIAASLPRPA SAAPRDVQAA AARAAAMDMP 120 AAAVVTAATV PPAAPKEPSP SPHQQVPAEQ ALVVADPDEE ELEEIVELPA IDEDALAAAA 180 ADDMFWTAAA SFHDSASADP WYEPAAAWMH AAGIAAHVDD MLVVPGLAAD QQLWAPQPDG 240 IVSSGFGALL WNL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 19 | 90 | 3 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G149400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU974575 | 1e-115 | EU974575.1 Zea mays clone 453357 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014660533.1 | 1e-171 | ethylene-responsive transcription factor ERF039 | ||||
Swissprot | Q9LYD3 | 6e-48 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | K3XYY6 | 1e-170 | K3XYY6_SETIT; Uncharacterized protein | ||||
STRING | Si007144m | 1e-170 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 5e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G149400.1.p |
Publications ? help Back to Top | |||
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