PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G117300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 447aa    MW: 47621 Da    PI: 4.8639
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G117300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.23.4e-082265340
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                        +r C+ + + +++++C  ++ +lC+ C ++ H+       H++v
  Sevir.4G117300.1.p 22 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHERV 65
                        578*****************************667888888876 PP
2CCT66.57.6e-23391434144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk+a
  Sevir.4G117300.1.p 391 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRA 434
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.9E-122067IPR000315B-box-type zinc finger
PROSITE profilePS5011910.5662067IPR000315B-box-type zinc finger
PfamPF006437.3E-72365IPR000315B-box-type zinc finger
CDDcd000211.72E-92567No hitNo description
PROSITE profilePS5101715.993391433IPR010402CCT domain
PfamPF062031.3E-17391433IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MIATGSSAKA AAAAGAVGGK AARACDGCLR RRARWYCAAD DAFLCQGCDT SVHSANPLAR  60
RHERVRLQPT SPLRAPPPAW AAQCEPRDDV VPAWFRRKAR TPRGGHAKSV AQVLSRRLVV  120
PEAAGGDGDS PEGRNGEGEV EEEQLLYRVP IFDPALAEFC SPPPLEDAAA VASSCNEDGT  180
VEDPANPHPA APAPPPVQFF PDGHASFEPT DAELREFAAD MEALLGRGLD DGNEDSSFYM  240
ETLGLLDPVD DDAGVARVKL EIDGGGAFDA SGTPACGVQL EAEASDEMLD IDFDYGSPQE  300
TPDDKAASSD TSAAATDAQF SQTSLSLTLN YEAIIQSWGS SPWTGSGERP HVKLDGSWPH  360
DYTSMWVVGG MVGHVGEELG TPRLGMMDGG REARVSRYRE KRRTRLFAKK IRYEVRKLNA  420
EKRPRMKGRF VKRATAGGSV AVAGLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401417RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G117300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965182.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLK3XWX40.0K3XWX4_SETIT; Uncharacterized protein
STRINGSi006432m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-73B-box type zinc finger protein with CCT domain