PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G111000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-X1
Protein Properties Length: 886aa    MW: 95307.5 Da    PI: 7.9581
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G111000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.22.3e-05236253118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG+H C+  CH+GpC++C
  Sevir.4G111000.1.p 236 CGNHVCKDMCHPGPCGEC 253
                         ****************** PP
2zf-NF-X119.22.6e-06294311118
            zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                         CG H+C+  CHeG+CppC
  Sevir.4G111000.1.p 294 CGVHRCKVNCHEGECPPC 311
                         ****************** PP
3zf-NF-X118.25.3e-06389407119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H Cq lCH G CppC 
  Sevir.4G111000.1.p 389 CGQHACQLLCHSGHCPPCL 407
                         ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004380.023117135IPR000967Zinc finger, NF-X1-type
PfamPF014226.5119134IPR000967Zinc finger, NF-X1-type
CDDcd060087.83E-11162210No hitNo description
PfamPF014220.054172189IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0021172191IPR000967Zinc finger, NF-X1-type
CDDcd060089.27E-9226269No hitNo description
PfamPF014220.0023236253IPR000967Zinc finger, NF-X1-type
SMARTSM004383.5E-4236255IPR000967Zinc finger, NF-X1-type
CDDcd060083.27E-12284332No hitNo description
PfamPF014224.0E-5294311IPR000967Zinc finger, NF-X1-type
SMARTSM004384.2E-4294313IPR000967Zinc finger, NF-X1-type
CDDcd060081.81E-7379431No hitNo description
PfamPF014221.2E-4389406IPR000967Zinc finger, NF-X1-type
SMARTSM004382.2E-4389408IPR000967Zinc finger, NF-X1-type
PfamPF0142250446462IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34446464IPR000967Zinc finger, NF-X1-type
PfamPF014220.0079499514IPR000967Zinc finger, NF-X1-type
SMARTSM004380.21499534IPR000967Zinc finger, NF-X1-type
PfamPF014227.9536562IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32543564IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MICYDMVRRS APIWSCDSCF SIFHLPCIRK WVRSPASAAD ASPAADPASP SWRCPGCQSV  60
YDTPARDLAY TCFCRRRREP PNDHFLTPHS CGEPCSKPLE RAEPPGAKGE DADATRCPHV  120
CVLQCHPGPC PPCKAFAPDR PCPCGKQIIV RRCADRSTPV TCGRPCERML PCRRHRCEKV  180
CHTGPCGDCA VVISARCFCG KKNEALLCGD MVVKGKLSEE DGVFSCSEPC GRMLTCGNHV  240
CKDMCHPGPC GECELMPGKI TTCHCGKTRL QESRASCLDP IPICDKICDK NLPCGVHRCK  300
VNCHEGECPP CLVRVEQKCR CGSSGRMVEC YQVKKEEFRC NKPCGHKKNC GRHRCSECCC  360
PLSRKFAQLE GGDWDPHLCQ ISCGKKLRCG QHACQLLCHS GHCPPCLETI FTDLTCACGR  420
TSIPPPLPCG TPTPSCPHQC SVPQPCGHPA SHSCHFGDCP PCVVPVMREC IGGHVMLRNI  480
PCGSKDIRCN QPCGKNRQCG IHACNRACHP APCDQPPANG DASSSSGGKA SCGQVCGAAR  540
RECKHTCTAP CHPSSQCPDL RCEFPVTITC SCGRITATVP CGAGGASSSD NMFEWVVAIE  600
ERCKFLVLGK VRGSSSGNLK LHVFCPMLKD KRDAIRLIAD RWKLSVQSAG WEPKRFITIH  660
VTPKSKPPAR ILGSKAGAPV TAAHPYFDPL VDMDPRLVVA MLDLPRDADV NALVLRFGGE  720
CELVWLNDKN AIAVFNDPAR AATALRRLDY GSAYQGAAMF MPSSAQASSS GNVWVGGQKD  780
GGLAARSNPW KKPGAAEPDL SSGDWTGVAG HAPAPGWRGA NTAAQVMGTQ NRWNVLESDA  840
ATSSGPGEDR KTAPRTDVQN SGNAGPSVSK LQPDVEVDDW EEACE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G111000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643844.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0E0HNJ40.0A0A0E0HNJ4_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PVW20.0A0A0E0PVW2_ORYRU; Uncharacterized protein
STRINGORUFI06G09920.10.0(Oryza rufipogon)
STRINGONIVA06G11110.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1