PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G108300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family E2F/DP
Protein Properties Length: 452aa    MW: 49309.3 Da    PI: 7.628
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G108300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP72.64.4e-2385150171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                         rk+ksL+ll+++f++l+ +++ +++ l+++ak+L    v  +rRRiYDi+NVLe+++++ +++kn+++w g
  Sevir.4G108300.1.p  85 RKQKSLGLLCSNFVALYDREDVETIGLDDAAKRL---GV--ERRRIYDIVNVLESVGILVRRAKNRYTWLG 150
                         79****************9999************...**..****************************87 PP
2E2F_TDP79.23.7e-25229309171
             E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
                         rkeksL+lltq+f+kl+ + e ++v+l+e+a+ L+ e     ++++k+RR+YDi+NVL++lnliek     ++k+++rw g
  Sevir.4G108300.1.p 229 RKEKSLGLLTQNFVKLFLTMEVETVSLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKtqqadTRKPAFRWLG 309
                         79******************************************************************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-2581151IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.65E-1684149IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.4E-2885150IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023195.0E-2186150IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-23226310IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.3E-32229309IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.2E-20230309IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-12231309IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDAASAAAGP SSSAAEAAAA GPSSSAAAAR PSSSSGAEPP AAAAQPPPPA AAPQVLFQVP  60
VQVGGASSGS GSSVARACRH HAYSRKQKSL GLLCSNFVAL YDREDVETIG LDDAAKRLGV  120
ERRRIYDIVN VLESVGILVR RAKNRYTWLG FGGVPAALKE LKERALREMS GSPVLLPMEE  180
SSTANLSDDE DDKLEDGDED AESEKLSQSI DNTSDKPDAP GCRLRSDHRK EKSLGLLTQN  240
FVKLFLTMEV ETVSLDEAAR LLLGEGHAES NMRTKVRRLY DIANVLSSLN LIEKTQQADT  300
RKPAFRWLGQ AKRMQENNVT VALAPVRPNK RAFGTDLTNI DNKRGRLDSA MENKAKLMQG  360
AGNIVKTFER QLGQGNRSDF VYGPFHPAVA KKQETDDHTI KQKERRTIQD WENLAVSFRP  420
QYQNQALNDL FGHYVEAWKS WYLDLTRETS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A2e-39843013228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G108300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280270.0KJ728027.1 Zea mays clone pUT6165 E2F-DP transcription factor (E2F12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966858.10.0E2F transcription factor-like E2FE
TrEMBLK3XWV40.0K3XWV4_SETIT; Uncharacterized protein
STRINGSi006412m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-107DP-E2F-like 1