PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.4G098400.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 179aa MW: 20449.6 Da PI: 9.593

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.4G098400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.1	7.3e-28	49	99	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e +++e +s+yF++pi +AA+eL+v+lT+LK++CR++GI+RWPhRk+ksl Sevir.4G098400.1.p 49 ETVLTFELVSQYFYMPIMQAARELNVGLTLLKKRCRELGIPRWPHRKMKSL 99 5679*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.61	34	119	IPR003035	RWP-RK domain
Pfam	PF02042	3.7E-22	52	99	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MEQADSKAED GHTTKGLPLL CYGEEKEVSS NSGTMVVGAD QQRVRPEAET VLTFELVSQY 60 FYMPIMQAAR ELNVGLTLLK KRCRELGIPR WPHRKMKSLQ SLINNVQVLQ EAGKATGEEQ 120 LRAMVEMLQQ EKQLLEQRPY VQLDEKTKRL RQACFKANYK KRRLLALEAG EAPRSHKY*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.4G098400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003509	7e-52	AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBank	AP003569	7e-52	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	7e-52	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	7e-52	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004966836.1	1e-128	protein RKD2
Swissprot	Q9M9U9	9e-43	RKD1_ARATH; Protein RKD1
TrEMBL	A0A368QSK5	1e-127	A0A368QSK5_SETIT; Uncharacterized protein
TrEMBL	K3Y253	1e-127	K3Y253_SETIT; Uncharacterized protein
STRING	Si008273m	1e-127	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	8e-40	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.4G098400.1.p