PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G097000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 393aa    MW: 39878 Da    PI: 8.2742
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G097000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1371.6e-42582342137
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++   
  Sevir.4G097000.1.p  58 PPKRTSTKDRHTKVDGRGRRIRMPAICAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSSFSIPahl 148
                         789******************************************************************9998889999999977777999 PP

                 TCP  89 ..................................kaaksaakskksqksaasalnlakesr.akarar.are.rtrekmriknkln 137
                                                           + ++++ +   s +s +  l+++ +s+ a a+++ +r+ r++++m+++++++
  Sevir.4G097000.1.p 149 rapglpgtrfggargdpwdrvvglgfggaegppsATSSASSPLLLSFHSGSVGLDVSPSSSsAAASSDlSRKrRWEQEMQQQQQQQ 234
                         999999**************************963333333777777777777888885551444444677778888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.2E-4462234IPR005333Transcription factor, TCP
PROSITE profilePS5136927.67564118IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDVSGDAGGG RRPNFPLQLL EKKEEQPCST SPAAGVGAGA GANGAAGPGE LQVRKVAPPK  60
RTSTKDRHTK VDGRGRRIRM PAICAARVFQ LTRELGHKTD GETIEWLLQQ AEPAVIAATG  120
TGTIPANFTS LNISLRSSGS SFSIPAHLRA PGLPGTRFGG ARGDPWDRVV GLGFGGAEGP  180
PSATSSASSP LLLSFHSGSV GLDVSPSSSS AAASSDLSRK RRWEQEMQQQ QQQQQQQQYQ  240
QQMAGYTQSQ MPGTVWMVPS SNAQAAAAAA GGGGGGGESI WTFPQGASGG GAATLYRGVP  300
SGLHLMNFPA PMALLPGGQQ LGLGQAGGNN DNGGGGGEGH MGILAALNAY RVQAASDAAA  360
AAQNGAEGGS SQHHQQHGGG ERQESMSPSD DS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved the regulation of plant development. Together with TCP15, modulates plant stature by promoting cell division in young internodes. Represses cell proliferation in leaf and floral tissues (PubMed:21668538). Together with TCP15, acts downstream of gibberellin (GA), and the stratification pathways that promote seed germination. Involved in the control of cell proliferation at the root apical meristem (RAM) by regulating the activity of CYCB1-1 (PubMed:25655823). Involved in the regulation of seed germination. May regulate the activation of embryonic growth potential during seed germination (PubMed:17953649, PubMed:22155632). Acts together with SPY to promote cytokinin responses that affect leaf shape and trichome development in flowers (PubMed:22267487). Transcription factor involved in the regulation of endoreduplication. Represses endoreduplication by activating the gene expression of the key cell-cycle regulators RBR1 and CYCA2-3 (PubMed:25757472). Regulates the expression of the defense gene pathogenesis-related protein 2 (PR2) in antagonism to SRFR1, a negative regulator of effector-triggered immunity (PubMed:24689742). Involved in positive regulation of plant defense. Represses jasmonate (JA) response to promote disease resistance. Regulates the plant immune system by transcriptionally repressing a subset of JA-responsive genes (PubMed:28132837). {ECO:0000269|PubMed:17953649, ECO:0000269|PubMed:21668538, ECO:0000269|PubMed:22155632, ECO:0000269|PubMed:22267487, ECO:0000269|PubMed:24689742, ECO:0000269|PubMed:25655823, ECO:0000269|PubMed:25757472, ECO:0000269|PubMed:28132837}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G097000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during seed imbibition (PubMed:17953649). Circadian-regulation with the lowest expression in the middle of the dark period (PubMed:17953649). {ECO:0000269|PubMed:17953649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965036.10.0transcription factor TCP15
SwissprotQ93Z001e-57TCP14_ARATH; Transcription factor TCP14
TrEMBLK3XXH30.0K3XXH3_SETIT; Uncharacterized protein
STRINGSi006631m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37443479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-44TCP family protein
Publications ? help Back to Top
  1. Steiner E, et al.
    The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin.
    Plant Physiol., 2016. 171(2): p. 1485-94
    [PMID:27208284]
  2. Yang L, et al.
    Pseudomonas syringae Type III Effector HopBB1 Promotes Host Transcriptional Repressor Degradation to Regulate Phytohormone Responses and Virulence.
    Cell Host Microbe, 2017. 21(2): p. 156-168
    [PMID:28132837]
  3. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  4. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]