PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G092100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 348aa    MW: 36848.2 Da    PI: 6.7896
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G092100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-19173222255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr+++ +g+WvAeIr p++   r+r +lg+fg+ae+Aa a+++a+ +l+g
  Sevir.4G092100.1.p 173 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFGSAEDAALAYDKAAFRLRG 222
                         59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-29172230No hitNo description
PROSITE profilePS5103222.655173230IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21173230IPR016177DNA-binding domain
SMARTSM003804.2E-35173236IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-31173231IPR001471AP2/ERF domain
PRINTSPR003671.3E-12174185IPR001471AP2/ERF domain
PfamPF008471.5E-13174222IPR001471AP2/ERF domain
PRINTSPR003671.3E-12212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAAIDLDTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFSY PYVYHSALPQ  60
DSYYYQPAAA ASSCTALPPP PPAPTTTSFS QLPPLPPCSS SYAMPTAPYQ TLSMDAAAGL  120
ALNHLSPAQI QQIQAQLLLR QQQRGLVASL LGPRAQPMKQ AGAVAPPSTA SKLYRGVRQR  180
HWGKWVAEIR LPRNRTRLWL GTFGSAEDAA LAYDKAAFRL RGDAARLNFP SLRRGGSHLA  240
GPLDASVDAK LTAICQGLAA APDSKSAAAA PESPKASAST TTTEGDESVH SAGSPPPLPA  300
FQQQQQQVAP VPEMASLDFT EAPWDESAAL HLNKYPSWEI DWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20172230160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-20172230463ATERF1
3gcc_A8e-20172230463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G092100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964981.10.0ethylene-responsive transcription factor RAP2-13
SwissprotQ8H1E47e-65RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLK3Y2G10.0K3Y2G1_SETIT; Uncharacterized protein
STRINGSi008385m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.12e-43ERF family protein
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]