PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G082200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 233aa    MW: 23987.5 Da    PI: 4.2547
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G082200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.1e-162371355
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ykGVr ++ +g+Wv+e+r p   g+++r++lg++ tae Aa+a++aa ++l+g
  Sevir.4G082200.1.p 23 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTAEAAARAYDAALLCLKG 71
                        9****998.*******9998...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.94E-162282IPR016177DNA-binding domain
PROSITE profilePS5103220.6662281IPR001471AP2/ERF domain
SMARTSM003808.3E-282287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-262281IPR001471AP2/ERF domain
PfamPF008474.0E-102371IPR001471AP2/ERF domain
PRINTSPR003672.9E-82334IPR001471AP2/ERF domain
CDDcd000185.97E-142381No hitNo description
PRINTSPR003672.9E-84561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKTTRASDD IAAAAAHGGK RTYKGVRMRS WGSWVSEVRA PGQKTRIWLG SHSTAEAAAR  60
AYDAALLCLK GSAAAADLNF PLRLPFDLPP AAMSPKAIQR VAAAAAAAAS NGGADFAACA  120
AADNNADSGC SGTATPAWSN GSPSDASAVS SPESTLSSES ELTAHYGDGD GDADYYNSLA  180
DIDAFFQSPK CMEYAMMDPC SAFFAPAPMA MDDGSWEEEG DIALWSFSTL DC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G082200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046876e-87AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149626e-87AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126146e-87CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964908.11e-165ethylene-responsive transcription factor ERF014
TrEMBLK3Y1B31e-163K3Y1B3_SETIT; Uncharacterized protein
STRINGSi007977m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.12e-23ERF family protein