PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G063600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 305aa    MW: 31956.9 Da    PI: 4.6773
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G063600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-2092142155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr+++ +g+++AeIrdp +   ++r++lg+f+taeeAa++++  +++l+g
  Sevir.4G063600.1.p  92 PSYRGVRRRP-WGKYAAEIRDPHK---NARVWLGTFDTAEEAARMYDSEARRLRG 142
                         57********.**********743...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.97E-2992152No hitNo description
PfamPF008471.3E-1292142IPR001471AP2/ERF domain
PROSITE profilePS5103223.10393150IPR001471AP2/ERF domain
SMARTSM003802.3E-3493156IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2193151IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-3093151IPR001471AP2/ERF domain
PRINTSPR003677.6E-1194105IPR001471AP2/ERF domain
PRINTSPR003677.6E-11116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVEAAHKAAA IRKVVRIFCD DRDATDSSGD EAEAGAGVAT PRGVRKFVKE IRMEQRRAIT  60
SSAPAPAGRV APGGGGKRKL PGVPAAARAA EPSYRGVRRR PWGKYAAEIR DPHKNARVWL  120
GTFDTAEEAA RMYDSEARRL RGPSATTNFP AAPPKPVRVV PPPQAIPAVV ADLSSAEESS  180
DESQLVGSPV SVLPAMPGET TDDAVAPLAL KPTDATDSTA KKDASPFSAD AILPELEEGV  240
FPGIITPFDD PALGVLFDDI AAPRLDHLPD DGHLGDLPMW PGEDGCGFSD IGDDFFAAEP  300
LPAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21891501072Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G063600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276771e-60KJ727677.1 Zea mays clone pUT5604 AP2-EREBP transcription factor (EREB135) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966735.10.0ethylene-responsive transcription factor CRF1
TrEMBLK3Y2K40.0K3Y2K4_SETIT; Uncharacterized protein
STRINGSi008428m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-29cytokinin response factor 4