PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G058900.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 402aa    MW: 44814.4 Da    PI: 6.3836
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G058900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.7e-07149172123
                         EEETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                         y+C  Cg++F+++ +L+rH r  H
  Sevir.4G058900.1.p 149 YSCAVCGRRFPTRPDLTRHFRQlH 172
                         99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.62E-5147175No hitNo description
Gene3DG3DSA:3.30.160.601.0E-4148175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4149172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256149177IPR007087Zinc finger, C2H2
PROSITE patternPS000280151172IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.40.50.10107.4E-5176288IPR029060PIN domain-like
CDDcd061673.60E-9192299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MPLALPFLHL LPNPAPFHPF RIHRTQQSHP HLPLRTRRPS AAAAAEAENP SASVDVEMVR  60
GQDGVWTARS PTVVVLWDLD NKPPRGPPFP AATSLIAAAS LLGRVVSISA FANRHAFSHL  120
PAWVAAERRD RRALDRAERA GSAAPSVPYS CAVCGRRFPT RPDLTRHFRQ LHERERNKKL  180
SRLRSLKGKK RQKYRERFIT GNTKYEDAAR ELLTPKVGYG LASELRRAGV QVRTVSDKPQ  240
AADHALKRQV KHCLACGVDW MVLVSDDSDF TDTVRNARAA DLRTVVVGDG CRMLGKVADI  300
WLPWDRVENG EVDEEMLRSC TFPEFGEDQE DEQGEEFRLD WDTSDLDDVV DDIVGMRTSL  360
HGAAAISAFA DEDITDGIFG VELKGDSMFW SSDDEEEDGY L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G058900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964750.10.0uncharacterized protein LOC101782541
RefseqXP_022681430.10.0uncharacterized protein LOC101782541
TrEMBLK3XXC60.0K3XXC6_SETIT; Uncharacterized protein
STRINGSi006586m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.13e-93C2H2-like zinc finger protein