PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.4G058800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 196aa MW: 19974.3 Da PI: 10.6401 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.5e-17 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g Sevir.4G058800.1.p 52 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 101 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-31 | 51 | 110 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-22 | 52 | 111 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.972 | 52 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.83E-25 | 52 | 111 | No hit | No description |
SMART | SM00380 | 2.8E-37 | 52 | 115 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-10 | 52 | 101 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-12 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-12 | 91 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MEREATAFYP PPQPAPAAPA AGPAAATVAA GTGAAGGGVG GHARGGGVGG RQYRGVRMRK 60 WGKWVAEIRE PNKRSRIWLG SYSTAVAAAR AYDTAVFYLR GRSARLNFPD QLDGAAVADR 120 PEGHKDGGGG GAGLTAAAIR KKAAEVGARV DALHCGVGLG GGAPPPPPLS THSHRRRAKN 180 PDLNREPTPD TSDDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-16 | 50 | 113 | 3 | 67 | ATERF1 |
3gcc_A | 7e-16 | 50 | 113 | 3 | 67 | ATERF1 |
5wx9_A | 1e-15 | 44 | 113 | 6 | 76 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.4G058800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964749.1 | 1e-135 | ethylene-responsive transcription factor ERF008 | ||||
Swissprot | O22174 | 5e-46 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
TrEMBL | A0A368QRA6 | 1e-134 | A0A368QRA6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J34361.1.p | 3e-85 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3943 | 30 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 2e-30 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.4G058800.1.p |
Publications ? help Back to Top | |||
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