PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G048300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARR-B
Protein Properties Length: 667aa    MW: 72711.5 Da    PI: 6.5801
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G048300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28218271155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Sevir.4G048300.1.p 218 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 271
                         79*******************.********************************8 PP
2Response_reg75.71.7e-25291371109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl vdD+p+ +++l+++l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge + + + 
  Sevir.4G048300.1.p  29 VLAVDDDPVCLKVLETLLRRCHY-HVTTTNQAITALKLLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKSVMKG 117
                         799********************.***************99999********************87754.558****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         +  Ga d+l Kp+ +eel++
  Sevir.4G048300.1.p 118 ITHGACDYLLKPVRIEELRN 137
                         ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.6E-1975666IPR017053Response regulator B-type, plant
SuperFamilySSF521725.69E-3526154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23006.9E-4126156No hitNo description
SMARTSM004484.1E-3027139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.39928143IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.1E-2329138IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.92E-2630142No hitNo description
PROSITE profilePS5129411.351215274IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-30216276IPR009057Homeodomain-like
SuperFamilySSF466891.38E-19216275IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-25218271IPR006447Myb domain, plants
PfamPF002491.2E-6220270IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MLLGAARMEE KKGLMMGRER DRFPVGMRVL AVDDDPVCLK VLETLLRRCH YHVTTTNQAI  60
TALKLLRENR DMFDLVISDV HMPDMDGFKL LELVGLEMDL PVIMLSVNGE TKSVMKGITH  120
GACDYLLKPV RIEELRNIWQ HVVRRKFSKR ERSNLEIYKD FNKPPSADSC HGHSQIVGGA  180
SDQSGRICKK RKEMHSDEED DGEENDLQEG DEPSAAKKPR VVWSVELHRK FVAAVNQLGI  240
DKAVPKRILE LMNVEKLTRE NVASHLQKYR LYLKRLSAVA SQQASIVAAF GGRDPSFLHM  300
GAFEGIQSYQ PFVPSAALSS FNPHGLLTGA SAATFGVQEL APAMTVQTAT NNGIISHCGS  360
DGSKFQYVGL QENQHANLAQ GSTTSLGLPQ LEQKWIHQEN NDLSTVFSGS ALANSLSGAL  420
QRVTSSSLPP QELLECTQAK LSIQTSMPMP SMNSELVERT IGISCNLQDS SVSHQGALPI  480
NEGFSADKLQ LHDPFDGTSG TKFSVTMPVC PSGSLTATNN TKSGASSSCG TVLLAPDTGR  540
HSNYMQFGGA SNSRREMDGM KQDHLQNQGL SIGGFSHDFG ACMTQQTNAS MLPLTPEVKI  600
HSLTSEDKLK QKNVCDFGIP KLHGGVSSTS CNFDGLLSSM IKAEKDDFSF TDNDLGCDFF  660
PLGACI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A8e-25214277164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins (By similarity). Functions as a response regulator in response to cytokinins (PubMed:22383541). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:22383541}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G048300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964668.10.0two-component response regulator ORR22
SwissprotQ5SML50.0ORR22_ORYSJ; Two-component response regulator ORR22
TrEMBLK3XVQ50.0K3XVQ5_SETIT; Two-component response regulator
STRINGSi006013m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]