PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G046700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family FAR1
Protein Properties Length: 211aa    MW: 24275.2 Da    PI: 9.252
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G046700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR126.62e-083335990
                FAR1 59 rtgCkaklkvkkekdgkwevtkleleHnHela 90
                        +tgCka+++v++  d++w+v+ +  +HnH+l+
  Sevir.4G046700.1.p  3 HTGCKATMVVNLI-DERWHVAYFMADHNHDLV 33
                        69***********.****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-6333IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MIHTGCKATM VVNLIDERWH VAYFMADHNH DLVVKPSLKK FLRSHKGIPQ QEKEFITLLH  60
GCNLSTGRIM QLMNEMYGSA QMVPYEGKDV SSFRSKIRRG KKYKDMQEAI DRFREIQQED  120
PNFFCKVKLD DENRVESSSC GSAVQCSCLG LPISKVRAQF QPVEKPFNYV VSPVILQYDP  180
KHNTCEYGVI SGAKWRVSIR ICMKTLVKWH *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.4G046700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311908.12e-62protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A368QSU61e-140A0A368QSU6_SETIT; Uncharacterized protein
STRINGSi008721m1e-74(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7287518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-14FAR1-related sequence 5